het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Picea abies (Norway Spruce) genome build 1.0c (pab-b1.0c)

Version 1.0 Picea abies assembly collapsed for STAR

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
pab-b1.0cr1-14806Picea abies (Norway Spruce) 1.0cCombined_01:41921919-41921994+1,1682.67UCCAAAGGGAUUGCAUUGAUUCmiR393nearMIRNAShortStack
pab-b1.0cr1-14828Picea abies (Norway Spruce) 1.0cCombined_01:100033657-100033918-4170.95UAGGCACUGGAUUUAGAGAUUnearMIRNAShortStack
pab-b1.0cr1-14886Picea abies (Norway Spruce) 1.0cCombined_01:247328694-247328815-3950.90CGGCCAACAGCGUUUCGGGGCmiR11423nearMIRNAShortStack
pab-b1.0cr1-14948Picea abies (Norway Spruce) 1.0cCombined_01:402942330-402942399+6051.38GCCAAGCUCUCAAAAGGAUUGmiR11436nearMIRNAShortStack
pab-b1.0cr1-15038Picea abies (Norway Spruce) 1.0cCombined_02:101245400-101245495-2990.68UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-15078Picea abies (Norway Spruce) 1.0cCombined_02:203211366-203211478-2900.66UCACGAUACUCAGCAAUCACUGnearMIRNAShortStack
pab-b1.0cr1-15119Picea abies (Norway Spruce) 1.0cCombined_02:296718024-296718140+3090.71UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-15225Picea abies (Norway Spruce) 1.0cCombined_03:52307044-52307213+6,02613.78UUGCUUGAGUAACUUGAACACAmiR11570nearMIRNAShortStack
pab-b1.0cr1-15279Picea abies (Norway Spruce) 1.0cCombined_03:165405915-165406154-5,39712.34UUGUAGAUGAAUGUUGUGGACnearMIRNAShortStack
pab-b1.0cr1-15402Picea abies (Norway Spruce) 1.0cCombined_03:476478314-476478462-4210.96UCACUGAAGAAUUAUGCCACUmiR11508nearMIRNAShortStack
pab-b1.0cr1-15408Picea abies (Norway Spruce) 1.0cCombined_03:496579798-496579819+4280.98UAAUUCCACAUCCAAUGACUGmiR11484nearMIRNAShortStack
pab-b1.0cr1-15479Picea abies (Norway Spruce) 1.0cCombined_04:120511127-120511310-6721.54ACCUGGAGAGAUUUGAUCCCUnearMIRNAShortStack
pab-b1.0cr1-15641Picea abies (Norway Spruce) 1.0cCombined_04:496002844-496003106-1,4033.21UGAGAAUGACGUUGAAGCGAAnearMIRNAShortStack
pab-b1.0cr1-15816Picea abies (Norway Spruce) 1.0cCombined_05:348823638-348823827+4621.06UUUGGCAUUGUUGUAGACAACnearMIRNAShortStack
pab-b1.0cr1-16057Picea abies (Norway Spruce) 1.0cCombined_06:283758220-283758312-2250.52CAGAAGUGUUUGGGUGGACUCmiR395nearMIRNAShortStack
pab-b1.0cr1-16106Picea abies (Norway Spruce) 1.0cCombined_06:380775175-380775227-5831.33UGUUACGCCUGUUUGAAGCCUnearMIRNAShortStack
pab-b1.0cr1-16110Picea abies (Norway Spruce) 1.0cCombined_06:389316383-389316588-1,1642.66UCACGAUGAUCAGUAAUCACUGmiR11507nearMIRNAShortStack
pab-b1.0cr1-16180Picea abies (Norway Spruce) 1.0cCombined_06:511827290-511827446-1,4103.22CGGCCAGCAGCGUUUCGGGGCmiR11423nearMIRNAShortStack
pab-b1.0cr1-16316Picea abies (Norway Spruce) 1.0cCombined_07:223055927-223056064+2,9506.75UAUGCCUGCUUGUAGAUCUGUUmiR11500nearMIRNAShortStack
pab-b1.0cr1-16420Picea abies (Norway Spruce) 1.0cCombined_07:389411400-389411499+5371.23ACAGCUGUGAAGCAACUCGGCnearMIRNAShortStack
pab-b1.0cr1-16612Picea abies (Norway Spruce) 1.0cCombined_08:181981400-181981447-2220.51AUGGGACCAGGGCUUAUCCCCnearMIRNAShortStack
pab-b1.0cr1-16729Picea abies (Norway Spruce) 1.0cCombined_08:334172854-334172886+1,1872.72UUCCUCAGAUGUACCGGCACUGnearMIRNAShortStack
pab-b1.0cr1-17006Picea abies (Norway Spruce) 1.0cCombined_09:133002560-133002723-1,2662.90AGACCGAAGGCGAGAAUGGAGCmiR11427nearMIRNAShortStack
pab-b1.0cr1-17465Picea abies (Norway Spruce) 1.0cCombined_10:55438058-55438080+2230.51AGAGGACUAUCUGUAUUGGCUnearMIRNAShortStack
pab-b1.0cr1-17727Picea abies (Norway Spruce) 1.0cCombined_10:274430964-274431038-5951.36UUGCUGGUCUUGGAGUUGCUUGnearMIRNAShortStack
pab-b1.0cr1-17733Picea abies (Norway Spruce) 1.0cCombined_10:278522146-278522299-2,8346.48UGACAACGAGAGAGAGCACGCUmiR535nearMIRNAShortStack
pab-b1.0cr1-18064Picea abies (Norway Spruce) 1.0cCombined_11:39864194-39864466-7,14616.34GAAGCCUGUUCUGGACUGCCUnearMIRNAShortStack
pab-b1.0cr1-18212Picea abies (Norway Spruce) 1.0cCombined_11:165051173-165051197-3120.71UUGUUUACCGAGGCUCUGAAGnearMIRNAShortStack
pab-b1.0cr1-136Picea abies (Norway Spruce) 1.0cMA_101138:4432-4616-7071.62UAUAGCGCUCUGGUUCUCAUGmiR11496nearMIRNAShortStack
pab-b1.0cr1-276Picea abies (Norway Spruce) 1.0cMA_10204459:4753-5004-7661.75UAACCUGAUCGACUUGCCAUAmiR11483nearMIRNAShortStack
pab-b1.0cr1-312Picea abies (Norway Spruce) 1.0cMA_10222281:827-1057-4741.08AAGUGGGGGCGCUGGCAGACUGmiR11412nearMIRNAShortStack
pab-b1.0cr1-365Picea abies (Norway Spruce) 1.0cMA_102525:3558-3760-7351.68UCUUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
pab-b1.0cr1-835Picea abies (Norway Spruce) 1.0cMA_10354140:5462-5498-8281.89AGGCUGUGCUUUCUCUCUUCUCUnearMIRNAShortStack
pab-b1.0cr1-1167Picea abies (Norway Spruce) 1.0cMA_103984:1130-1296-2,1394.89UUCCAUUGCUUGCACACGCUGmiR11560nearMIRNAShortStack
pab-b1.0cr1-14455Picea abies (Norway Spruce) 1.0cMA_10425892:4862-5053+2,4005.49CUUGGAUUGAAGAGAGCUCCCmiR159nearMIRNAShortStack
pab-b1.0cr1-14456Picea abies (Norway Spruce) 1.0cMA_10425892:5770-6021+1,0952.50CUUGGAUUGAAGAGAGCUCCCmiR159nearMIRNAShortStack
pab-b1.0cr1-1757Picea abies (Norway Spruce) 1.0cMA_10427645:35972-36168+8461.94UUCGGAUCACUUAACUGGAUCnearMIRNAShortStack
pab-b1.0cr1-2042Picea abies (Norway Spruce) 1.0cMA_10428608:234-263+3350.77UUGCACCUCGACGGAUUUGAUnearMIRNAShortStack
pab-b1.0cr1-2143Picea abies (Norway Spruce) 1.0cMA_10428964:2122-2328+2820.65AGAAUCAACAAACUCUGGCUCUmiR11426nearMIRNAShortStack
pab-b1.0cr1-2572Picea abies (Norway Spruce) 1.0cMA_10430430:6894-6914+3040.70CUUGGACACAUGUUGAACACAnearMIRNAShortStack
pab-b1.0cr1-2926Picea abies (Norway Spruce) 1.0cMA_10431525:16663-16840+1,8124.14UUAUGAAUACAUCGUAGUGGUnearMIRNAShortStack
pab-b1.0cr1-3080Picea abies (Norway Spruce) 1.0cMA_10432105:27933-28037-2,6856.14UGACAACGAGAGAGAGCACGCUmiR535nearMIRNAShortStack
pab-b1.0cr1-3527Picea abies (Norway Spruce) 1.0cMA_10433715:4740-4935+5,15711.79UUGGAUUGAAGGGAGCUCCUmiR159nearMIRNAShortStack
pab-b1.0cr1-3708Picea abies (Norway Spruce) 1.0cMA_10434401:11978-12227-4,62010.57UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-4015Picea abies (Norway Spruce) 1.0cMA_10435563:4215-4273+3830.88UUGAGAUAUGCAUCCUAGAGCnearMIRNAShortStack
pab-b1.0cr1-4533Picea abies (Norway Spruce) 1.0cMA_10436765:13608-13669+1,4023.21UGAUCAGUAUUGCCUUGGAUGmiR11537nearMIRNAShortStack
pab-b1.0cr1-4716Picea abies (Norway Spruce) 1.0cMA_10437158:44711-44783+2330.53UUUACAGCUCUAGAGGUACUCnearMIRNAShortStack
pab-b1.0cr1-5087Picea abies (Norway Spruce) 1.0cMA_112341:19731-19836-2620.60UGCCAAAGGAGAGUUGCCCUGmiR399nearMIRNAShortStack
pab-b1.0cr1-5418Picea abies (Norway Spruce) 1.0cMA_121401:18953-19068-15,08834.50UCGCUCUGAUACCAUAUUGGAnearMIRNAShortStack
pab-b1.0cr1-5667Picea abies (Norway Spruce) 1.0cMA_128643:20530-20668-1,5063.44UGCCUGGCUCUCUGCAUGCCAnearMIRNAShortStack
pab-b1.0cr1-5702Picea abies (Norway Spruce) 1.0cMA_129542:8323-8544-1,2832.93CAGUGGUAACAUGAGUAGCCUnearMIRNAShortStack
pab-b1.0cr1-13642Picea abies (Norway Spruce) 1.0cMA_130221:22674-22799-8802.01CAGCCAAGGAUGAUUUGCCGACUnearMIRNAShortStack
pab-b1.0cr1-5769Picea abies (Norway Spruce) 1.0cMA_130788:18139-18231+3180.73UAGUGUUGAGAAGAUUGAGAAnearMIRNAShortStack
pab-b1.0cr1-5792Picea abies (Norway Spruce) 1.0cMA_131348:12137-12213+1,5133.46UCGUUGGGAUCUUUUCUGCCUmiR11520nearMIRNAShortStack
pab-b1.0cr1-5796Picea abies (Norway Spruce) 1.0cMA_131477:14384-14596-4140.95UGUAGCAUGAGAGGAGUAUGAGnearMIRNAShortStack
pab-b1.0cr1-5919Picea abies (Norway Spruce) 1.0cMA_135443:12929-13030-7341.68UUUGGUUAAGCAGGAUUACUmiR11444nearMIRNAShortStack
pab-b1.0cr1-5939Picea abies (Norway Spruce) 1.0cMA_135934:38183-38205-1,2392.83AUUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
pab-b1.0cr1-13601Picea abies (Norway Spruce) 1.0cMA_13696:32993-33163+1,0142.32UCUUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
pab-b1.0cr1-6072Picea abies (Norway Spruce) 1.0cMA_1391:22012-22186+1,3423.07UCUUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
pab-b1.0cr1-6255Picea abies (Norway Spruce) 1.0cMA_14472:31216-31255-4541.04AGAAUUUGGUCAGUCUGGGACnearMIRNAShortStack
pab-b1.0cr1-6268Picea abies (Norway Spruce) 1.0cMA_14581:23004-23222+1,7133.92CUUUCAGAGAUUUGAUCCCUCnearMIRNAShortStack
pab-b1.0cr1-6377Picea abies (Norway Spruce) 1.0cMA_155441:2367-2409+1,3283.04CCCAAAGGAAUCUGGAAGCCUnearMIRNAShortStack
pab-b1.0cr1-6432Picea abies (Norway Spruce) 1.0cMA_158438:8712-8896+1,1002.52UCAGUAUCUUCAAAUGACAGCnearMIRNAShortStack
pab-b1.0cr1-6709Picea abies (Norway Spruce) 1.0cMA_1702:16054-16308-1,2932.96UUCCACAGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-6906Picea abies (Norway Spruce) 1.0cMA_176622:16863-16884-2300.53GAGACUGAUUGAAUAGAGGCUnearMIRNAShortStack
pab-b1.0cr1-7187Picea abies (Norway Spruce) 1.0cMA_18404:91756-91864-1,8644.26UCUGAGUAAAGGCACGUUCGGmiR11527nearMIRNAShortStack
pab-b1.0cr1-7378Picea abies (Norway Spruce) 1.0cMA_191607:1954-2002+8,85020.24CACCCAUCUGAUGACCUGAACnearMIRNAShortStack
pab-b1.0cr1-7655Picea abies (Norway Spruce) 1.0cMA_20374:11388-11578-4551.04UCAUCAUUGAGAGCAGCAUUGmiR397nearMIRNAShortStack
pab-b1.0cr1-13564Picea abies (Norway Spruce) 1.0cMA_20512:71237-71366-2,6586.08UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-7867Picea abies (Norway Spruce) 1.0cMA_21858:8521-8569+6731.54AUGGAUUAUGCAUUCGAAGUGmiR11438nearMIRNAShortStack
pab-b1.0cr1-8114Picea abies (Norway Spruce) 1.0cMA_253237:8046-8156-2900.66AAUGUUAGUUUUGGUAGAGCUnearMIRNAShortStack
pab-b1.0cr1-8228Picea abies (Norway Spruce) 1.0cMA_27109:54154-54230+2330.53UUGCACCUCUGAACAAUGAUGnearMIRNAShortStack
pab-b1.0cr1-8478Picea abies (Norway Spruce) 1.0cMA_311426:1650-1929+2690.62CUGUGGUUCAUAUUAUUGGGCnearMIRNAShortStack
pab-b1.0cr1-8515Picea abies (Norway Spruce) 1.0cMA_315890:5164-5418-3850.88AGUUUAUCUCACUGUGGGCCUnearMIRNAShortStack
pab-b1.0cr1-14263Picea abies (Norway Spruce) 1.0cMA_348195:5802-5884-3410.78UGACAGAAGAGAGUGGGCACmiR156nearMIRNAShortStack
pab-b1.0cr1-13824Picea abies (Norway Spruce) 1.0cMA_43181:4116-4191+7801.78UCCAAAGGGAUUGCAUUGAUUCmiR393nearMIRNAShortStack
pab-b1.0cr1-14214Picea abies (Norway Spruce) 1.0cMA_448081:2045-2066+3770.86UAAUUCCACAUCCAAUGACUGmiR11484nearMIRNAShortStack
pab-b1.0cr1-9503Picea abies (Norway Spruce) 1.0cMA_46203:20337-20361+6571.50UAUUGAGUGCAGCGUUGACGAmiR397nearMIRNAShortStack
pab-b1.0cr1-9570Picea abies (Norway Spruce) 1.0cMA_472531:5510-5582-3520.81CAAGGCUGUUGAGUUGAGAUCmiR11449nearMIRNAShortStack
pab-b1.0cr1-10089Picea abies (Norway Spruce) 1.0cMA_5555:12551-12801+1,4803.39AAGUGCACAAGAUGAGGGAUUnearMIRNAShortStack
pab-b1.0cr1-13202Picea abies (Norway Spruce) 1.0cMA_588365:1642-1842+5871.34CUGGCAUUCUGUCCACCUCCAmiR394nearMIRNAShortStack
pab-b1.0cr1-10461Picea abies (Norway Spruce) 1.0cMA_6245599:200-358-9392.15UUGAGCUUGGCCUUUGAUCCUmiR11565nearMIRNAShortStack
pab-b1.0cr1-13897Picea abies (Norway Spruce) 1.0cMA_65226:6545-6774-19,60544.83UUGGACUGAAGGGAGCUCCCCmiR319nearMIRNAShortStack
pab-b1.0cr1-10768Picea abies (Norway Spruce) 1.0cMA_68251:10986-11132-2,0074.59UUCCACGGCUUUCUUGAACUUmiR396nearMIRNAShortStack
pab-b1.0cr1-10959Picea abies (Norway Spruce) 1.0cMA_71538:14648-14764+3570.82UCUAUGUACUCUGCAGUGGCAmiR11522nearMIRNAShortStack
pab-b1.0cr1-11167Picea abies (Norway Spruce) 1.0cMA_74267:14270-14431+1,9324.42CAAUUACUAUGUGGAUUGCUmiR11451nearMIRNAShortStack
pab-b1.0cr1-13803Picea abies (Norway Spruce) 1.0cMA_75539:12011-12135+2,8826.59UGACAACGAGAGAGAGCACGCUmiR535nearMIRNAShortStack
pab-b1.0cr1-14674Picea abies (Norway Spruce) 1.0cMA_7889178:2563-2811-43,10098.56CCAUGGUGGCUCGGACGAGAAGmiR950nearMIRNAShortStack
pab-b1.0cr1-11723Picea abies (Norway Spruce) 1.0cMA_8343:6276-6305+7501.72UUCUUCACGUCGGGUUCACCAnearMIRNAShortStack
pab-b1.0cr1-11816Picea abies (Norway Spruce) 1.0cMA_84717:4863-5119+42,54597.30CCAUGGUGGCUCGGACGAGAAGmiR950nearMIRNAShortStack
pab-b1.0cr1-12252Picea abies (Norway Spruce) 1.0cMA_90442:15538-15818-2,1674.96UGACAGAAGAUAGACUUUGGUCmiR3699nearMIRNAShortStack
pab-b1.0cr1-14351Picea abies (Norway Spruce) 1.0cMA_910894:3122-3258+2,4865.69AAAUUCAGGAACUUCAAAUGCUUnearMIRNAShortStack
pab-b1.0cr1-14301Picea abies (Norway Spruce) 1.0cMA_945816:4326-4388+6151.41AUGGAUUAUGCAUUCGAAGUGmiR11438nearMIRNAShortStack