Data from Lunardon et al. (2020)

Annotations viewer

Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
atr-b1r1-336	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00001:5353703-5353966	-	38	0.81	AGUCGGUCGCCGCCAGGCCU		siRNA20	ShortStack
atr-b1r1-677	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00001:9340852-9341122	+	2,406	51.21	AGUUACUAAUUCAUGAUCUG		siRNA20	ShortStack
atr-b1r1-2983	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00004:6197551-6197591	+	97	2.07	GAACCCCAUAGCCAGCACCA		siRNA20	ShortStack
atr-b1r1-3061	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00005:1036605-1036638	+	55	1.17	CGGCCCCACGGUGGGCGCCA		siRNA20	ShortStack
atr-b1r1-5949	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00009:2681616-2681639	+	184	3.92	AUCCUUAACCUCAUGGCUAG		siRNA20	ShortStack
atr-b1r1-8502	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00013:192447-192862	.	31	0.66	GUUCAAGAAAUCUGUGGAGA		siRNA20	ShortStack
atr-b1r1-9583	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00014:863178-863251	+	841	17.90	GACCUUGUGGCCCAAUGGAC		siRNA20	ShortStack
atr-b1r1-9743	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00014:5920799-5920859	+	35	0.75	AUAGACUUGUACCUCGAUGCG		siRNA20	ShortStack
atr-b1r1-10155	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00016:2808611-2808718	-	76	1.62	GGCGGUCUCCUUGGCUAACC	miR169	siRNA20	ShortStack
atr-b1r1-11004	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00017:5249490-5249512	-	52	1.11	UGAAUUGCAGAAUCUUUAUU		siRNA20	ShortStack
atr-b1r1-12017	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00019:4600375-4600397	-	69	1.47	UGACUUCAAUUGUUUUGCAG		siRNA20	ShortStack
atr-b1r1-12691	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00021:4371269-4371363	+	418	8.90	GCUGGAAUAGCUCAGUUGGC		siRNA20	ShortStack
atr-b1r1-12828	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00021:6276722-6276787	-	25	0.53	GCUGGAAUAGCUCAGUUGGC		siRNA20	ShortStack
atr-b1r1-14420	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00025:3824856-3825374	.	25	0.53	UUGCAGUUUCUCUUGCCCUU		siRNA20	ShortStack
atr-b1r1-15185	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00028:1619424-1619443	-	44	0.94	UUUCAGUAAAAUUCUGUGUA		siRNA20	ShortStack
atr-b1r1-18054	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00036:1168749-1168902	-	36	0.77	AGGAAUCUGAAUACUCAGUA		siRNA20	ShortStack
atr-b1r1-18629	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00037:481131-481373	+	25	0.53	UACGUCGGCACAGUUUUUCU		siRNA20	ShortStack
atr-b1r1-20595	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00041:1939547-1939852	+	361	7.68	GCUGGAAUAGCUCAGUUGGC		siRNA20	ShortStack
atr-b1r1-21134	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00043:4391255-4391274	-	26	0.55	GUUCCCCAGCGGAGUCGCCA		siRNA20	ShortStack
atr-b1r1-21210	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00044:1780329-1780348	+	25	0.53	UGAAUUGCAGAAUCCUUUCU		siRNA20	ShortStack
atr-b1r1-23240	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00049:3684533-3684556	+	28	0.60	UUGGCCAACUCUGUUUAUUU		siRNA20	ShortStack
atr-b1r1-23282	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00049:4246278-4246376	-	31	0.66	UUGGACUCGAAAACUUUUUC		siRNA20	ShortStack
atr-b1r1-24071	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00053:1190590-1190652	-	28	0.60	UUGCUUCGUCUGGCAUCCAG		siRNA20	ShortStack
atr-b1r1-25553	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00058:72448-72569	+	1,236	26.31	GCUGGAAUAGCUCAGUUGGC		siRNA20	ShortStack
atr-b1r1-25621	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00058:792389-792459	-	27	0.58	AGACUGUAUGCAUCAAUCAA		siRNA20	ShortStack
atr-b1r1-25991	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00059:1868489-1868518	+	1,145	24.37	GCGGAUAUGGUCGAAUGGUA		siRNA20	ShortStack
atr-b1r1-27364	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00063:3247487-3247511	+	298	6.34	GGCGGAUGUAGCCAAGUGGA		siRNA20	ShortStack
atr-b1r1-30569	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00077:501676-502251	+	28	0.60	UUUCUGUAAAAAUUGGCACUGGA		siRNA20	ShortStack
atr-b1r1-31111	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00079:1172820-1172854	-	1,738	36.99	UUGGACUGAAGGGAGCUCCC	miR319	siRNA20	ShortStack
atr-b1r1-31687	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00081:3209425-3209574	+	104	2.21	UUUGGAUUGAAGGGAGCUCC	miR159	siRNA20	ShortStack
atr-b1r1-33064	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00089:374856-374989	+	47	1.00	UUGACCAAAAUACUCUUAUU		siRNA20	ShortStack
atr-b1r1-33526	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00090:2965325-2965407	+	26	0.55	UGUUUCUUGUAUUGUUGCUU		siRNA20	ShortStack
atr-b1r1-33813	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00092:1150268-1150366	-	14,147	301.12	CUUGUGUCGCAACGAUUCGU		siRNA20	ShortStack
atr-b1r1-34006	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00094:294553-294722	.	42	0.89	UUCGAGACCAAAAAGAAUUU		siRNA20	ShortStack
atr-b1r1-35212	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00101:2381498-2381583	+	149	3.17	AGUCCCGUAGCUCAGUUGGU		siRNA20	ShortStack
atr-b1r1-35862	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00104:2344341-2344402	-	30	0.64	UUUGGAUUGAAGGGAGCUUC		siRNA20	ShortStack
atr-b1r1-36718	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00111:1251445-1251476	+	184	3.92	UUUCCUCAACUGUAGUUAAG		siRNA20	ShortStack
atr-b1r1-37987	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00123:1290501-1290552	+	52	1.11	UUCCACACUUUCUUGAACUG		siRNA20	ShortStack
atr-b1r1-38387	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00128:1147421-1147440	+	50	1.06	AUGUUGAUCAUGAUAUGACU		siRNA20	ShortStack
atr-b1r1-38492	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00129:1507425-1507449	-	26	0.55	GUUCCAAUUUUAUCGGAUUU		siRNA20	ShortStack
atr-b1r1-38588	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00130:745124-745289	+	324	6.90	CUUUAUUUUUUUCUGAUACA		siRNA20	ShortStack
atr-b1r1-39869	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00142:233624-233724	+	2,086	44.40	GACCGCAUAGCGCAGUGGAU		siRNA20	ShortStack
atr-b1r1-40113	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00144:508903-509186	.	32	0.68	CGUUUUAGAUGGAUGAGACC		siRNA20	ShortStack
atr-b1r1-42492	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold00174:461782-461949	+	89	1.89	AAUGAUGAUUUUCUAUGAAG		siRNA20	ShortStack
atr-b1r1-45724	Amborella trichopoda (Amborella) 1	AmTr_v1.0_scaffold05406:46-153	+	42	0.89	CAGGGCCACGUGCAACCUCC		siRNA20	ShortStack
atr-b1r1-46161	Amborella trichopoda (Amborella) 1	mito_amb3179kb:1327451-1327674	.	24	0.51	CUUGGUUGGACCAACCCAAC		siRNA20	ShortStack
atr-b1r1-46337	Amborella trichopoda (Amborella) 1	mito_amb3179kb:2279171-2279323	-	1,326	28.22	ACAUUCUUAGCUCAGUCGGA		siRNA20	ShortStack