het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Chenopodium quinoa (Quinoa) genome build 1.0 (cqi-b1.0)

Version v1.0 of Chenopodium quinoa cv. Chilean quinoa PI 614886 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
cqi-b1.0r1-79Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:18824968-18825188-2291.84ACUGAACUGAACUCAGCUGAACUsiRNA23ShortStack
cqi-b1.0r1-287Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1001:4526272-4526504-2371.90AUAAAUCUGUAGAUAUAUCGCCUsiRNA23ShortStack
cqi-b1.0r1-296Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1001:5352401-5352495+7055.65AUUGUACACAUGUCACUCUGACAsiRNA23ShortStack
cqi-b1.0r1-417Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1040:117165-117381-2912.33ACUAAACUGAACUGAAAGGAACUsiRNA23ShortStack
cqi-b1.0r1-463Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1040:1830250-1830324-1441.15ACUGAACCGAGCUGAGUUGAACUsiRNA23ShortStack
cqi-b1.0r1-544Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1102:116190-116311-1961.57AUUGAACUAAACUGAAUAGAGUUsiRNA23ShortStack
cqi-b1.0r1-807Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1214:1949404-1949561.2071.66CCAAGUUGACGGACUAGACAAUUsiRNA23ShortStack
cqi-b1.0r1-933Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1251:93653-93728.2792.24AGUGUUCGAUUGUCUAAAAACUUsiRNA23ShortStack
cqi-b1.0r1-966Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1251:2027395-2027467+2892.32AGAGAUUUCGGACUGAUUGAACCsiRNA23ShortStack
cqi-b1.0r1-998Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1257:1753263-1753304-1861.49UCUCGGAUACAUGUAAUAAAAUAsiRNA23ShortStack
cqi-b1.0r1-1295Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:2683373-2683728-2562.05ACUGAACUGAGCUGAACUAAGUUsiRNA23ShortStack
cqi-b1.0r1-1386Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1412:2911868-2911990-1,69213.56AAGGACAGCUUUACAGAGAAAUCsiRNA23ShortStack
cqi-b1.0r1-1417Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1426:3157464-3157492+2652.12AUGAGAUUUGAAUCUGAAUGAUUsiRNA23ShortStack
cqi-b1.0r1-1456Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1447:3457302-3457473+2151.72CCUGAACAAAAUCCAAGUGAAUUsiRNA23ShortStack
cqi-b1.0r1-1511Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1480:762714-762757+1601.28ACAGGUUAACGAUCAUAAGGACCsiRNA23ShortStack
cqi-b1.0r1-1584Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1516:1074527-1074564.1291.03AUCUGACAAAAGUAUACCCGAUAsiRNA23ShortStack
cqi-b1.0r1-1847Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1566:4063951-4064297.3933.15CUUGUUGGCCCACAAAUUAUCUGsiRNA23ShortStack
cqi-b1.0r1-1895Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1606:572509-572553-1531.23GAUGAGAAUCGAUCCCAGGAUUAsiRNA23ShortStack
cqi-b1.0r1-1964Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1611:1452092-1452199-2702.16ACUGAGAUGAACUGAACUAAACUAsiRNA23ShortStack
cqi-b1.0r1-2077Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1675:1466459-1466492-4673.74UCUGAGCGUUGCACUGAAAUGCUsiRNA23ShortStack
cqi-b1.0r1-2325Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1710:7596734-7596805+2421.94AUGAGAUAAUGAGAUUUGAGCUCsiRNA23ShortStack
cqi-b1.0r1-2391Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:3193844-3193904+2271.82AAGUAAACCAUGGUAAUCGGCUAsiRNA23ShortStack
cqi-b1.0r1-2582Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1783:2619222-2619351.4623.70GAACGACGCGUGAUUUUGUCAUAsiRNA23ShortStack
cqi-b1.0r1-2598Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1810:122482-122518+5364.29UUACCGAGUUACUGUAGAUGAUAsiRNA23ShortStack
cqi-b1.0r1-2602Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1810:463113-463175+2411.93UGAUGAGAAUCGAUCCCAGGAUAsiRNA23ShortStack
cqi-b1.0r1-2769Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1862:435855-435884+1911.53ACCCUGACUAGACUUUAACCCUCsiRNA23ShortStack
cqi-b1.0r1-3011Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1992:1261403-1261455+1711.37AAGAGGAAUGUAAUUUAGGGACAsiRNA23ShortStack
cqi-b1.0r1-3129Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1995:3902339-3902450-5014.01CACGAGAACGACAUGUAGCCUUAsiRNA23ShortStack
cqi-b1.0r1-3344Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2048:10388964-10389055-5574.46AUCGCAGGAGAGAUGGCACUCGCsiRNA23ShortStack
cqi-b1.0r1-3489Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:3047456-3047662.1731.39AGCGAGCAGAACAUAGUAGAAUAsiRNA23ShortStack
cqi-b1.0r1-3534Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:5854454-5854708.1080.87CACUUUCGUUGCAACUUUGGACCsiRNA23ShortStack
cqi-b1.0r1-3540Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:6141845-6141992+2441.96CAAACAAAGGACGGAAAAAACUUsiRNA23ShortStack
cqi-b1.0r1-3594Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:9613425-9613476.2512.01ACAUGUGUACUCGGAUGUAUAUAsiRNA23ShortStack
cqi-b1.0r1-4054Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2370:1380677-1380725-2141.71CUUAUCUGAACUUGUUGCACCUAsiRNA23ShortStack
cqi-b1.0r1-4107Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2370:3350367-3350655-4583.67ACUGAGAUGAACUGAACUGAACAsiRNA23ShortStack
cqi-b1.0r1-4142Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2370:5420114-5420249-8676.95ACCGAACUGCACUGAACUGAGUUsiRNA23ShortStack
cqi-b1.0r1-4258Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2412:1722701-1722762.1581.27CAAGUUAGUCAUAUUGUGUAACUsiRNA23ShortStack
cqi-b1.0r1-4311Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2465:1046877-1047046+7485.99ACGAGAUUUGAUAUCGGAAGGUUsiRNA23ShortStack
cqi-b1.0r1-4472Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2493:3358891-3359124+1891.51ACUGAACUGAGUUGAGCUGAGUUsiRNA23ShortStack
cqi-b1.0r1-4474Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2493:3454918-3455026-2512.01ACCGAACCGAACCGAACUGAACUsiRNA23ShortStack
cqi-b1.0r1-4514Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2493:5031676-5031733.1361.09CUAGAACAUAACCACCCAGAAUUsiRNA23ShortStack
cqi-b1.0r1-4635Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2624:1323444-1323649+2161.73GCCGAGCUGAACUGAAUUAAAUUsiRNA23ShortStack
cqi-b1.0r1-4755Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2674:755613-755674-3773.02AAUGUACACAUGUCACUCUGAUAsiRNA23ShortStack
cqi-b1.0r1-4936Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2716:2654637-2654802.1631.31CUAUGAGAAACUGGGACUCCCUAsiRNA23ShortStack
cqi-b1.0r1-4938Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2716:2793201-2793311.4063.25CCAUAUUACUGUAGAACAUUAUAsiRNA23ShortStack
cqi-b1.0r1-5162Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2751:8166299-8166467+1621.30GAACUGAGCUGAACUGAACAACUsiRNA23ShortStack
cqi-b1.0r1-5289Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2837:1628599-1628672.2532.03CUUUGCGAGACAUGUGUUCUAUAsiRNA23ShortStack
cqi-b1.0r1-5299Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2837:1939358-1939501-1771.42ACUGAACUGAACUGAACCGAACUsiRNA23ShortStack
cqi-b1.0r1-5393Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2862:2733595-2733644+1981.59CCGGAAAGAACAUAAGGUAUAUAsiRNA23ShortStack
cqi-b1.0r1-5667Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2933:1101791-1101875.3102.48AGGUCCAUUUAAGAAUUUCUAUAsiRNA23ShortStack
cqi-b1.0r1-5691Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2939:689554-689652-1391.11GAGGAAUGUAUUGAAUUUAUAUAsiRNA23ShortStack
cqi-b1.0r1-5721Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2939:2435635-2435818.2481.99GAUUAUGUUGCAACUGUAUGCCUsiRNA23ShortStack
cqi-b1.0r1-6095Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3097:1040251-1040463-17,150137.40UUCAUGGACGUUGAUAAGAUCCUsiRNA23ShortStack
cqi-b1.0r1-6208Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3144:570573-570718-4013.21CCCGAGUGACUUGUAACCUGUUAsiRNA23ShortStack
cqi-b1.0r1-6229Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:4008674-4008850.3092.48GUCAGAUGACUAGUGACCUGAUAsiRNA23ShortStack
cqi-b1.0r1-6348Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3297:17803-17871+2852.28UGAUGAGAAUCGAUCCUAGGAUAsiRNA23ShortStack
cqi-b1.0r1-6471Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3333:1867175-1867335.1711.37ACGAGACAGUGACAUUUGGCAUAsiRNA23ShortStack
cqi-b1.0r1-6561Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3378:1052805-1052866.2351.88GUGGCAAACAGGUCGUUUGGAUUsiRNA23ShortStack
cqi-b1.0r1-6598Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3378:2653554-2653625.1691.35GAUUGAUUUCGGACUUUAAAGUCsiRNA23ShortStack
cqi-b1.0r1-6735Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3422:825336-825467-1591.27ACUGAACUGAACCAAGCUGAACUsiRNA23ShortStack
cqi-b1.0r1-6799Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3422:3909306-3909364.2902.32CAACCUUUGAAAGUCGGAGAACUsiRNA23ShortStack
cqi-b1.0r1-7180Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3498:2162153-2162313+1671.34AUGAGAUUUGAAGCUGUGACCUUsiRNA23ShortStack
cqi-b1.0r1-7498Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3670:72278-72451-2842.28AACCCAAACAUGAUAUAAGGACAsiRNA23ShortStack
cqi-b1.0r1-7524Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3670:684021-684111.1581.27CAGGGACAUUUCAGUAGAUGAUUsiRNA23ShortStack
cqi-b1.0r1-7599Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3674:1160641-1160705-6705.37AAGGAGAAUUGUCCUAUCGGAUUsiRNA23ShortStack
cqi-b1.0r1-7711Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3686:406648-406691.2251.80AUUGUCCACAUGUCACUCACAUAsiRNA23ShortStack
cqi-b1.0r1-8068Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3820:6217199-6217248.2161.73UUUAGAGAGUCACGUAGGAUCUAsiRNA23ShortStack
cqi-b1.0r1-8078Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3820:7360922-7361101-1160.93AGCUGAAUUGAACUGAAUCGAUUsiRNA23ShortStack
cqi-b1.0r1-8385Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3970:346546-346603+2952.36GUGAUGAUCAGGUCUUAAAGAUGsiRNA23ShortStack
cqi-b1.0r1-8445Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3984:1354001-1354025+1,52812.24UUCGACCAUGAAAACUCUUUUUUUsiRNA23ShortStack
cqi-b1.0r1-8591Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:1735102-1735159.1851.48ACACCUACUCUGCUCAAAAGCCUsiRNA23ShortStack
cqi-b1.0r1-8688Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4119:883886-883939-1601.28UAUUGAACCCUGGUCAUUUGAUUsiRNA23ShortStack
cqi-b1.0r1-8720Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4119:3033620-3033665-2061.65AUCUGACAAAAGUGUACCCGAUAsiRNA23ShortStack
cqi-b1.0r1-8787Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4206:1542477-1542559.1160.93GUGAAUAAUAGGAACUAAGAACCsiRNA23ShortStack
cqi-b1.0r1-8899Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4250:1377896-1377954-2702.16UGAUGAGAAUCGAUCCCAGGAUAsiRNA23ShortStack
cqi-b1.0r1-9056Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4257:2068736-2068836.960.77ACCGAUCGAUGCGUGAUUUUACAsiRNA23ShortStack
cqi-b1.0r1-9228Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4336:900392-900436+2922.34AUUGUACACAUGUCACUCUGAUAsiRNA23ShortStack
cqi-b1.0r1-9386Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4480:304131-304310-3022.42GACCCAAAUUCCGUCGGAAAGUUsiRNA23ShortStack
cqi-b1.0r1-9509Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4480:8944765-8944891.2341.88CGACGGAAUUGUUCUGACAGACAsiRNA23ShortStack