het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Chenopodium quinoa (Quinoa) genome build 1.0 (cqi-b1.0)

Version v1.0 of Chenopodium quinoa cv. Chilean quinoa PI 614886 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
cqi-b1.0r1-21Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:9434565-9434712-4013.21CUCAAUAUUCAUCGGAAUUGGCUsiRNA22ShortStack
cqi-b1.0r1-48Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:15069130-15069627.1881.51GUAAAACAUCUAGGUUGGACCCsiRNA22ShortStack
cqi-b1.0r1-49Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1000:15070626-15071187.4053.25AAUCGGAAUUGAACAUGAGUAAsiRNA22ShortStack
cqi-b1.0r1-550Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1105:1548360-1548753-4413.53UCGGAUUCGUGCAACUUAAAGGsiRNA22ShortStack
cqi-b1.0r1-551Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1105:1548962-1549266-2111.69UCAUGAGAUUUGUGACUUAAGUsiRNA22ShortStack
cqi-b1.0r1-552Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1105:1549387-1550248-5814.66GAGGAGAUUAUUGAGCUUACGGGCsiRNA22ShortStack
cqi-b1.0r1-1055Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1277:38620-38906+2081.67CUAGAGACACUGUGUAAGCACUsiRNA22ShortStack
cqi-b1.0r1-1059Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1279:1948995-1949019-2512.01UUCAACCAUGAAAAGUCUAGAUsiRNA22ShortStack
cqi-b1.0r1-1307Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3568955-3569325+1361.09CAACUCUUACAAUCCCCAAGAUsiRNA22ShortStack
cqi-b1.0r1-1308Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3569668-3571102.1,2269.82CAAGUUUGUCAGAUUGUCCAUCsiRNA22ShortStack
cqi-b1.0r1-1309Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3572618-3572866+3202.56CAUUCUGAUCCAGAUUUUACUCsiRNA22ShortStack
cqi-b1.0r1-1310Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3572969-3573137+450.36CAGUAAGUCACAAGGAAAUCCUsiRNA22ShortStack
cqi-b1.0r1-1311Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3573225-3573441+1571.26UUUUCCUCCGGCACUUGGCUCsiRNA22ShortStack
cqi-b1.0r1-1312Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3573612-3574147.4573.66CCUGGACGAUUUUUAUUUGCCUsiRNA22ShortStack
cqi-b1.0r1-1313Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1373:3574240-3574774.3893.12UAUAAGAAGUAUGGAACUCUCUsiRNA22ShortStack
cqi-b1.0r1-1340Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1393:152541-153567.5504.41AUCUGGAGGAUCGGUUGAUAGCsiRNA22ShortStack
cqi-b1.0r1-1642Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1526:826261-827180-1,24910.01UGAACAAUCCAUACAAAUGCCUsiRNA22ShortStack
cqi-b1.0r1-1643Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1526:827627-828592-1,0528.43UUGAAAUCUCGAACUAGGCAUAsiRNA22ShortStack
cqi-b1.0r1-1784Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1566:1422136-1423529.2,33318.69CAAUUCAUCUAUAUCAGGCACCUGsiRNA22ShortStack
cqi-b1.0r1-1785Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1566:1424014-1425592-2,01116.11UGCCGGAUAGAUGAAUUGACUCsiRNA22ShortStack
cqi-b1.0r1-2189Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1695:2562627-2562672+6615.30CCCCGGAUAGAAGACUCCUCUUsiRNA22ShortStack
cqi-b1.0r1-2190Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1695:2564158-2564304.5644.52CGGACACCAAGAUCGAAUGAUUsiRNA22ShortStack
cqi-b1.0r1-2210Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1700:2163039-2163911+8616.90CACGUAGGAUUUCAAUUGACCAACsiRNA22ShortStack
cqi-b1.0r1-2211Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1700:2164392-2164979.7195.76ACCCAGUACAACCGAUUUCGAGACsiRNA22ShortStack
cqi-b1.0r1-2214Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1700:2223039-2223085+2,63121.08UGAACCAAUGACUAUUCAUGAUsiRNA22ShortStack
cqi-b1.0r1-2363Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:250393-250499-4523.62UGCGAGUGCCGGAUGUACUAUUsiRNA22ShortStack
cqi-b1.0r1-2364Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:252483-252524.5084.07UUCCGGAGUCGAGCCGUUUACUsiRNA22ShortStack
cqi-b1.0r1-2365Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:254186-254328-1,35610.86CAACUAGUUUCGUAGCUGGACUsiRNA22ShortStack
cqi-b1.0r1-2366Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:254818-254860.4733.79CGGCUCGACUCCGGAAACAGCUsiRNA22ShortStack
cqi-b1.0r1-2367Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:255742-255826.9357.49GGCCAAUCAUCGUCGUCGGUGAsiRNA22ShortStack
cqi-b1.0r1-2368Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:256160-256259-6665.34UCGAACCAAUGAUUUUGAUCGCsiRNA22ShortStack
cqi-b1.0r1-2369Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:256390-256472-6655.33CACUUCGGUAUGAUAUGUGGGACCsiRNA22ShortStack
cqi-b1.0r1-2370Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:257193-257219-8757.01UACCUAGGACCCUCUACACCGGsiRNA22ShortStack
cqi-b1.0r1-2371Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:257505-257552-3602.88CAGCAAGUAUUACUGGAUGUCUsiRNA22ShortStack
cqi-b1.0r1-2372Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1729:257793-258113-3,46427.75CGGAUACGAACUUGUUCCACCUsiRNA22ShortStack
cqi-b1.0r1-2400Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:5375246-5376014.4113.29UAUUAGAAGAAUAUUGACCCCUsiRNA22ShortStack
cqi-b1.0r1-2401Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:5376099-5376669.3753.00UGAGGAUGAGAUGGUUGUCAUGACsiRNA22ShortStack
cqi-b1.0r1-2402Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:5377253-5377377+1150.92UAGCGAUUUCGUCACUUGGAUUsiRNA22ShortStack
cqi-b1.0r1-2403Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:5380741-5381374.3322.66UGCAAAAUUUCUGUACUCGCCUsiRNA22ShortStack
cqi-b1.0r1-2404Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1747:5381929-5383004+9487.60UUUGAACAUUCCUUUGGCCACUsiRNA22ShortStack
cqi-b1.0r1-2434Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1755:2346339-2346476-4333.47UCGUGUUUUAUUGAUCGGGUCUsiRNA22ShortStack
cqi-b1.0r1-2437Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1755:2348832-2349047-3472.78AGGACCACUAGCCACAUGUCACCCsiRNA22ShortStack
cqi-b1.0r1-2791Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1862:1627517-1627591-3092.48UUCCCAAGACCCCCCAUACCAAsiRNA22ShortStack
cqi-b1.0r1-2883Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1932:679232-679398-1291.03CCGGAAACCAAAACUUAGCUUUsiRNA22ShortStack
cqi-b1.0r1-2884Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1932:679513-680072-3052.44UACCAAGUCGGAUUUUGGGCCUsiRNA22ShortStack
cqi-b1.0r1-3159Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_1995:5344073-5344097+1571.26GCUCACUGCUCUUUCUGUCAGCmiR156siRNA22ShortStack
cqi-b1.0r1-3317Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2048:6581925-6582215.6895.52AUCCGGCUACAUGAACACCAGCsiRNA22ShortStack
cqi-b1.0r1-3318Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2048:6585159-6585432.5144.12CAACAAAGGAAUUGAACACACUsiRNA22ShortStack
cqi-b1.0r1-3346Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2048:10514433-10516145.1,33910.73CUUGACUGCCAGAGUUGACCUCsiRNA22ShortStack
cqi-b1.0r1-3347Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2048:10516449-10517883.1,30710.47CUUGACUGCCAGAGUUGACCUCsiRNA22ShortStack
cqi-b1.0r1-3484Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:2961582-2962019.4083.27UGGCAUGAAUGGGAACUCUUAUsiRNA22ShortStack
cqi-b1.0r1-3486Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:2963174-2963338.2311.85UACCCGGUGAUCCUAUAGACUGsiRNA22ShortStack
cqi-b1.0r1-3559Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:7269698-7270403-1,39811.20UGACUUUCUGUAAUUCUAGCCUsiRNA22ShortStack
cqi-b1.0r1-3584Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2088:8773665-8773688+1581.27CGACCAUGAAAACUCUAUUUUUsiRNA22ShortStack
cqi-b1.0r1-3698Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2127:6487767-6488034.2712.17UGGGCACUUGUAAAUUCGGCGAsiRNA22ShortStack
cqi-b1.0r1-4237Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2412:135950-136083+1651.32AUCGAUUGUGACUCACCAGUCAsiRNA22ShortStack
cqi-b1.0r1-4599Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2608:259517-259618.1341.07UUACCGUACCCGGUCGUCGCCGsiRNA22ShortStack
cqi-b1.0r1-4600Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2608:259738-260538.2,49920.02UCGUAGAGUUUGACACUAAAGUsiRNA22ShortStack
cqi-b1.0r1-4633Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2624:1210803-1211328.3142.52CAUCGCGGAAAGGCAAGAAACUsiRNA22ShortStack
cqi-b1.0r1-4639Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2624:1630192-1631439-1,1289.04UUCCGAAAGCUUCUAGAAUCUUsiRNA22ShortStack
cqi-b1.0r1-4790Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2690:61479-61567-2431.95UCUGGAUCAUAUUAUAUGCAACsiRNA22ShortStack
cqi-b1.0r1-5223Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2775:1743569-1743598+2091.67UAGUCCGGAUUUCAUUAAGAAUsiRNA22ShortStack
cqi-b1.0r1-5260Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2822:4759142-4760102+1,0448.36UCUUGUUAUUCAACUCUAGACUsiRNA22ShortStack
cqi-b1.0r1-5523Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_2888:4417603-4417802.2361.89UCGGAUCACAUAAGCAAUUCUGsiRNA22ShortStack
cqi-b1.0r1-6238Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:9521933-9522733-4233.39UGUUGAACCACGAAUAACGCCUsiRNA22ShortStack
cqi-b1.0r1-6240Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3163:9523791-9523976-780.63AGACUUUCUGGUUCUUCAACGCCUsiRNA22ShortStack
cqi-b1.0r1-6339Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3293:2568400-2568753.1941.55UUCCGGAAAUGUUCGUCAAAGCsiRNA22ShortStack
cqi-b1.0r1-6340Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3293:2570304-2570381+2061.65UGGCCCAGUAGAAUCGUGACACsiRNA22ShortStack
cqi-b1.0r1-6341Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3293:2570497-2570520+180.14UGCAGAAUCUCUCUGAAUCAGGGAsiRNA22ShortStack
cqi-b1.0r1-6342Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3293:2571106-2571338.2842.28CAGAGAAUGUCAUAGUCGGCCUsiRNA22ShortStack
cqi-b1.0r1-6343Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3293:2572573-2573025+3622.90UAUAUGCCACUUCGUCAGACAGsiRNA22ShortStack
cqi-b1.0r1-6911Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3594167-3594373.6505.21UCAACCUGUAGAAUUCGAUGAAsiRNA22ShortStack
cqi-b1.0r1-6913Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3594838-3595117.5734.59CAACAUCGGAAGCAAGCUUAGAsiRNA22ShortStack
cqi-b1.0r1-6914Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3595210-3595629.8226.59UAAGAGAUCGUAGUUUUGAUAsiRNA22ShortStack
cqi-b1.0r1-6916Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3596111-3596309.4843.88UGGCACUCAGUAGUAAAGCUUCsiRNA22ShortStack
cqi-b1.0r1-6917Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3596436-3596619.3492.80CAACAGCUGUUUAAAACUCAACsiRNA22ShortStack
cqi-b1.0r1-6918Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3429:3596792-3597184.6355.09CAAUUCUUAGGAUCAAAGGAAUsiRNA22ShortStack
cqi-b1.0r1-7399Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3617:1696972-1697310.2832.27CAAUCGUUCUAGCCUAGGCAUGsiRNA22ShortStack
cqi-b1.0r1-7400Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3617:1697593-1697877+1711.37CCUUGGGGUCGAAGUUUGGAAGsiRNA22ShortStack
cqi-b1.0r1-7609Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3674:1660600-1661030+4323.46CUAGACUCAUCGAGGUUCUCGAsiRNA22ShortStack
cqi-b1.0r1-7610Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3674:1661518-1662017+4053.25CAAGGAUGAGAGCCCAAAUGGAsiRNA22ShortStack
cqi-b1.0r1-7925Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3796:4154176-4154868-5454.37CGGGAUUCGACGACUUUGAAUGsiRNA22ShortStack
cqi-b1.0r1-8315Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3901:1562939-1562961-2441.96CCGGACUCUCAAGUUACAGACUsiRNA22ShortStack
cqi-b1.0r1-8316Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3901:1563500-1563673.5334.27UCGAGCGGUGAAAAAAUAGACCsiRNA22ShortStack
cqi-b1.0r1-8317Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3901:1571504-1571555.3062.45UAUAAACAAACGGAUUAGACCUsiRNA22ShortStack
cqi-b1.0r1-8417Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3973:1354023-1355198+8757.01UUUGGGACGGGAUAUUGAAUCCsiRNA22ShortStack
cqi-b1.0r1-8418Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_3973:1355371-1356018.2762.21UCGGAUAAGCCUAUUGAACCCUsiRNA22ShortStack
cqi-b1.0r1-8580Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:933451-935050.4,23833.95UUUCCUCUUGAAGCAUGUCACCsiRNA22ShortStack
cqi-b1.0r1-8623Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:6533860-6534184+1,36210.91AUUGCCGCCAAAGUUGGAUACUsiRNA22ShortStack
cqi-b1.0r1-8624Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:6535503-6535692+4373.50AAACAACCUUUUCUUUUCUCGGsiRNA22ShortStack
cqi-b1.0r1-8625Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4082:6536688-6537011.1,29310.36CACCGUUCAUCGCUCAGGGCCUsiRNA22ShortStack
cqi-b1.0r1-9237Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4336:2439804-2439849-220.18UAUGAGAAGGAUGCCACGAGCUsiRNA22ShortStack
cqi-b1.0r1-9297Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4413:833202-834220.2,32818.65UUUGGCAUGCCAUCGGACUUGAsiRNA22ShortStack
cqi-b1.0r1-9298Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4413:834888-836023-3,70129.65UUUGGCAUGCCAUCGGACUUGAsiRNA22ShortStack
cqi-b1.0r1-9374Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4471:295985-296058+2071.66CUUCGGUAUGAUAUGUGGGACCsiRNA22ShortStack
cqi-b1.0r1-9375Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4471:296834-297036.1,64213.16UAUCAGUGACUCAUGGAUUACCsiRNA22ShortStack
cqi-b1.0r1-9376Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4471:297364-297421-1,75414.05CAAUCGUAGACUAUGUGAUGCACCsiRNA22ShortStack
cqi-b1.0r1-9420Chenopodium quinoa (Quinoa) 1.0C_Quinoa_Scaffold_4480:2515237-2515301-1711.37UCCGGAACAGUUUGUUAACACCsiRNA22ShortStack