Data from Lunardon et al. (2020)

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Genome

Cucumis sativus (Cucumber) genome build 2 (csa-b2)

Version v2 of Cucumis sativus cv. Chinese Long 9930 from The Cucurbit Genomics Database

Locus type

Annotation source

Name contains:

Family contains:

Name	Genome	Coordinates	Strand	Reads	RPM	Major RNA	Family	Locus Type	Annotation Source
csa-b2r1-834	Cucumis sativus (Cucumber) 2	Chr1:2731577-2731755	+	15,118	23.23	CCUUGAAGCUUAGUUGCGAU		siRNA20	ShortStack
csa-b2r1-4544	Cucumis sativus (Cucumber) 2	Chr1:13072433-13072830	+	80,435	123.57	UGACAGAAGAGAGUGAGCAC	miR156	siRNA20	ShortStack
csa-b2r1-11439	Cucumis sativus (Cucumber) 2	Chr2:1701654-1701897	+	30,772	47.28	UGACAGAAGAGAGUGAGCAC	miR156	siRNA20	ShortStack
csa-b2r1-16875	Cucumis sativus (Cucumber) 2	Chr2:15243773-15243862	-	2,699	4.15	UCAUUCACGCAAAAAUGACA		siRNA20	ShortStack
csa-b2r1-17751	Cucumis sativus (Cucumber) 2	Chr2:18701665-18701688	+	434	0.67	CAUCCUUAACUAUCAUAAAG		siRNA20	ShortStack
csa-b2r1-20675	Cucumis sativus (Cucumber) 2	Chr3:3391336-3391461	+	647	0.99	UUCCACAGCUUUCUUAACUG		siRNA20	ShortStack
csa-b2r1-22698	Cucumis sativus (Cucumber) 2	Chr3:9637055-9637170	-	13,617	20.92	GAUCAUGCGGCAGUUUCACC	miR167	siRNA20	ShortStack
csa-b2r1-24255	Cucumis sativus (Cucumber) 2	Chr3:14251995-14252021	-	148	0.23	UUGAGCUAUGCUCGCUUUUU		siRNA20	ShortStack
csa-b2r1-24927	Cucumis sativus (Cucumber) 2	Chr3:16019678-16019782	-	2,490	3.83	CCUCCCUCAAAGGCUUCCAA	miR477	siRNA20	ShortStack
csa-b2r1-29909	Cucumis sativus (Cucumber) 2	Chr3:29331782-29331815	-	25	0.04	CGGAUCUGGUUGUUAACACU		siRNA20	ShortStack
csa-b2r1-39925	Cucumis sativus (Cucumber) 2	Chr4:17768540-17768581	+	249	0.38	AGCCACAAUAUGUUUAGGUA		siRNA20	ShortStack
csa-b2r1-43390	Cucumis sativus (Cucumber) 2	Chr5:4662980-4663410	+	1,810,778	2,781.88	UUGGACUGAAGGGAGCUCCC	miR319	siRNA20	ShortStack
csa-b2r1-50603	Cucumis sativus (Cucumber) 2	Chr5:23952386-23952758	+	356,534	547.74	UUGGACUGAAGGGAGCUCCC	miR319	siRNA20	ShortStack
csa-b2r1-51765	Cucumis sativus (Cucumber) 2	Chr5:27406770-27406791	-	283	0.44	AUAAAAUAAAUAUAGUUAUU		siRNA20	ShortStack
csa-b2r1-59420	Cucumis sativus (Cucumber) 2	Chr6:19981349-19981466	-	5,720	8.79	UAUACUAAUUCUCGUUCUCU		siRNA20	ShortStack
csa-b2r1-65075	Cucumis sativus (Cucumber) 2	Chr7:8960711-8960731	+	212	0.33	CCUGUUCAAGUAAGGUCGUA		siRNA20	ShortStack
csa-b2r1-65316	Cucumis sativus (Cucumber) 2	Chr7:9584104-9584394	-	1,069,100	1,642.45	GGUAGUUCGAUCGUGGAAUU		siRNA20	ShortStack
csa-b2r1-65633	Cucumis sativus (Cucumber) 2	Chr7:10448300-10448620	+	980,568	1,506.43	ACCAGAAUUCUUGAACAGCG		siRNA20	ShortStack