het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Cucumis sativus (Cucumber) genome build 2 (csa-b2)

Version v2 of Cucumis sativus cv. Chinese Long 9930 from The Cucurbit Genomics Database

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
csa-b2r1-42Cucumis sativus (Cucumber) 2Chr1:241176-241405-162,076249.00UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
csa-b2r1-429Cucumis sativus (Cucumber) 2Chr1:1445662-1445740+3630.56UCUAUCUAUACUAAAUCCAUUMIRNAShortStack
csa-b2r1-637Cucumis sativus (Cucumber) 2Chr1:2135508-2135763-106,658163.86UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
csa-b2r1-756Cucumis sativus (Cucumber) 2Chr1:2522380-2522660+682,4391,048.42GCUCUCUAUGCUUCUGUCAUCmiR156MIRNAShortStack
csa-b2r1-1432Cucumis sativus (Cucumber) 2Chr1:4895757-4895944-32,79150.38CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
csa-b2r1-2228Cucumis sativus (Cucumber) 2Chr1:7211674-7211808+23,74136.47UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
csa-b2r1-4117Cucumis sativus (Cucumber) 2Chr1:12060992-12061218-85,254130.98UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
csa-b2r1-4119Cucumis sativus (Cucumber) 2Chr1:12065097-12065280-14,83222.79UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
csa-b2r1-4141Cucumis sativus (Cucumber) 2Chr1:12101510-12101701-20,98432.24UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
csa-b2r1-5875Cucumis sativus (Cucumber) 2Chr1:16315821-16315941-4330.67GUAGAGACGUUAGAGUUGACUMIRNAShortStack
csa-b2r1-7010Cucumis sativus (Cucumber) 2Chr1:18955957-18956118+5,7378.81CGCUAUCCAUCCUGAGUUUCAmiR390MIRNAShortStack
csa-b2r1-7757Cucumis sativus (Cucumber) 2Chr1:20943575-20943782-24,05136.95UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
csa-b2r1-11312Cucumis sativus (Cucumber) 2Chr2:1330907-1331006+12,77619.63UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
csa-b2r1-11330Cucumis sativus (Cucumber) 2Chr2:1364728-1365014+987,5961,517.23UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
csa-b2r1-12116Cucumis sativus (Cucumber) 2Chr2:3548764-3548931-8431.30ACAAGUUAUGACUUAUGAGUCMIRNAShortStack
csa-b2r1-12648Cucumis sativus (Cucumber) 2Chr2:4754726-4755011-139,911214.94AAGCCAAGGAUGAAUUGCCGGmiR169MIRNAShortStack
csa-b2r1-13888Cucumis sativus (Cucumber) 2Chr2:8246005-8246146-27,99443.01UUAGAUGACCAUCAACGAACGmiR827MIRNAShortStack
csa-b2r1-14971Cucumis sativus (Cucumber) 2Chr2:10691040-10691288-81,988125.96UCAAGCUGCCAGCAUGAUCUAAmiR167MIRNAShortStack
csa-b2r1-15133Cucumis sativus (Cucumber) 2Chr2:11090145-11090288-122,579188.32UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
csa-b2r1-16301Cucumis sativus (Cucumber) 2Chr2:13796300-13796469-18,12627.85UUCCAUCUCUUGCACACUGGAmiR2950MIRNAShortStack
csa-b2r1-16978Cucumis sativus (Cucumber) 2Chr2:15576550-15576730-88,133135.40UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAShortStack
csa-b2r1-16990Cucumis sativus (Cucumber) 2Chr2:15605287-15605581+61,58094.61UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
csa-b2r1-17781Cucumis sativus (Cucumber) 2Chr2:18796328-18796542+1,4412.21CUAUUGUCUCCAUUAUUUGUGAUAMIRNAShortStack
csa-b2r1-18099Cucumis sativus (Cucumber) 2Chr2:19844334-19844506+126,016193.60UUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
csa-b2r1-18694Cucumis sativus (Cucumber) 2Chr2:21671425-21671572+14,55922.37UUGAGCCGUGCCAAUAUCACGmiR171MIRNAShortStack
csa-b2r1-20467Cucumis sativus (Cucumber) 2Chr3:2872554-2872664-2580.40UACCAAUAUUGGUGAACAUGCMIRNAShortStack
csa-b2r1-22626Cucumis sativus (Cucumber) 2Chr3:9416358-9416598+9,701,57914,904.41UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
csa-b2r1-27695Cucumis sativus (Cucumber) 2Chr3:22789902-22790038-61,07493.83UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
csa-b2r1-29028Cucumis sativus (Cucumber) 2Chr3:26167217-26167350+1,3012.00UAUUACUCUCUUGGCCGGUGAMIRNAShortStack
csa-b2r1-29399Cucumis sativus (Cucumber) 2Chr3:27316641-27316917-101,655156.17UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
csa-b2r1-29559Cucumis sativus (Cucumber) 2Chr3:27889196-27889414+45,82670.40GCCCUCGGGUCGCAGAUUACCmiR2111MIRNAShortStack
csa-b2r1-30082Cucumis sativus (Cucumber) 2Chr3:29772069-29772159-3850.59UAUUUCCUUGAAUUUCUUUCUMIRNAShortStack
csa-b2r1-32309Cucumis sativus (Cucumber) 2Chr3:36644789-36644980-97,591149.93UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
csa-b2r1-38110Cucumis sativus (Cucumber) 2Chr4:13051810-13052020+248,303381.47AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
csa-b2r1-38177Cucumis sativus (Cucumber) 2Chr4:13196306-13196580+54,78684.17UGGAGAAGCAGGGCACGUGCUmiR164MIRNAShortStack
csa-b2r1-40083Cucumis sativus (Cucumber) 2Chr4:18390246-18390542-547,068840.45UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
csa-b2r1-41374Cucumis sativus (Cucumber) 2Chr4:22021896-22022069+29,14544.78GCUUACUCUCUAUCUGUCACCmiR156MIRNAShortStack
csa-b2r1-41604Cucumis sativus (Cucumber) 2Chr4:22620541-22620706-280,238430.53UUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
csa-b2r1-41694Cucumis sativus (Cucumber) 2Chr4:22864740-22864948+48,89775.12UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
csa-b2r1-42420Cucumis sativus (Cucumber) 2Chr5:1704354-1704452+8331.28UAGUAUCAUAGUUGGUGGUCCMIRNAShortStack
csa-b2r1-43276Cucumis sativus (Cucumber) 2Chr5:4265271-4265565+1,885,4772,896.64UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
csa-b2r1-43605Cucumis sativus (Cucumber) 2Chr5:5408023-5408132+8,37612.87AGGGCUUCUCUCCAUUGGCAGGmiR399MIRNAShortStack
csa-b2r1-43607Cucumis sativus (Cucumber) 2Chr5:5412549-5412739+17,01026.13GGGCUUCUCUCCAUUGGCAGGmiR399MIRNAShortStack
csa-b2r1-44295Cucumis sativus (Cucumber) 2Chr5:7361126-7361277+4,5236.95UAGCCAAAAAUGACUUGCCUGCmiR169MIRNAShortStack
csa-b2r1-44809Cucumis sativus (Cucumber) 2Chr5:8638447-8638639-36,71556.41UCCAAAGGGAUCGCAUUGAUCmiR393MIRNAShortStack
csa-b2r1-48118Cucumis sativus (Cucumber) 2Chr5:17058977-17059080+4670.72GUUCCCUUCCAAACACUUCAGAmiR395MIRNAShortStack
csa-b2r1-49372Cucumis sativus (Cucumber) 2Chr5:20153551-20153827-299,370459.92UUCCAAGUCCACCCAUGCCCGCMIRNAShortStack
csa-b2r1-49649Cucumis sativus (Cucumber) 2Chr5:20905023-20905308+191,917294.84UGCACUGCCUCUUCCCUGGCUGmiR408MIRNAShortStack
csa-b2r1-50226Cucumis sativus (Cucumber) 2Chr5:22540847-22541034-1,5292.35CUGAAGUGUUUGGGGGAACUCmiR395MIRNAShortStack
csa-b2r1-51242Cucumis sativus (Cucumber) 2Chr5:26033013-26033228+12,26718.85UCGCAGGAGAGAUGGCACCAACMIRNAShortStack
csa-b2r1-51249Cucumis sativus (Cucumber) 2Chr5:26041751-26041904-6,99910.75GACCAUUCUCUUGUGACAUAMIRNAShortStack
csa-b2r1-52254Cucumis sativus (Cucumber) 2Chr6:1038264-1038446+7,79811.98UCCAAAGGGAUCGCAUUGAUCmiR393MIRNAShortStack
csa-b2r1-53443Cucumis sativus (Cucumber) 2Chr6:4097383-4097456+1,7162.64UUUAGAUAUCAACAGCACUGUMIRNAShortStack
csa-b2r1-54189Cucumis sativus (Cucumber) 2Chr6:6265215-6265405-1,6022.46UAGCCAAGGAUGACUUGCCUGCmiR169MIRNAShortStack
csa-b2r1-54424Cucumis sativus (Cucumber) 2Chr6:7030205-7030301+5,6958.75UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
csa-b2r1-54729Cucumis sativus (Cucumber) 2Chr6:7852253-7852456-6350.98UCUUGUUCUUGAUUUUGCUGCMIRNAShortStack
csa-b2r1-55658Cucumis sativus (Cucumber) 2Chr6:10216811-10217081-437,272671.78AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
csa-b2r1-55679Cucumis sativus (Cucumber) 2Chr6:10267256-10267466+77,080118.42UGCAUUUGCACCUACACCUUCmiR530MIRNAShortStack
csa-b2r1-56278Cucumis sativus (Cucumber) 2Chr6:11751227-11751357-28,00143.02AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
csa-b2r1-56500Cucumis sativus (Cucumber) 2Chr6:12350260-12350532-96,302147.95GGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
csa-b2r1-57195Cucumis sativus (Cucumber) 2Chr6:14067590-14067811+3,6755.65UCGCAGAAGAGAUGGUGCCGUMIRNAShortStack
csa-b2r1-58700Cucumis sativus (Cucumber) 2Chr6:17956697-17956813+3,8735.95UGGAGAGGCAGGGCACAUGCUmiR164MIRNAShortStack
csa-b2r1-58894Cucumis sativus (Cucumber) 2Chr6:18465230-18465499-315,845485.23AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
csa-b2r1-58963Cucumis sativus (Cucumber) 2Chr6:18652784-18652979+8,870,71113,627.96UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
csa-b2r1-61298Cucumis sativus (Cucumber) 2Chr6:26675616-26675696-3550.55UUUGGAAUGAUUUCUAAGUUCMIRNAShortStack
csa-b2r1-61494Cucumis sativus (Cucumber) 2Chr6:27676192-27676284-3840.59GGGCAAUUACUCUUUUGGCAGAmiR399MIRNAShortStack
csa-b2r1-61495Cucumis sativus (Cucumber) 2Chr6:27678889-27679188+21,78633.47UGCCAAAAGAGACUUGCCCUGMIRNAShortStack
csa-b2r1-61496Cucumis sativus (Cucumber) 2Chr6:27682129-27682206+3,2154.94UGCCAAAAGAGACUUGCCCUGMIRNAShortStack
csa-b2r1-61642Cucumis sativus (Cucumber) 2Chr6:28412184-28412298+4600.71CAGGUCAAUGCAGACAAUAAUMIRNAShortStack
csa-b2r1-61710Cucumis sativus (Cucumber) 2Chr6:28939442-28939608+62,10295.41UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAShortStack
csa-b2r1-62681Cucumis sativus (Cucumber) 2Chr7:2408695-2408791+26,26640.35UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
csa-b2r1-67093Cucumis sativus (Cucumber) 2Chr7:14051588-14051863+187,361287.84UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
csa-b2r1-67096Cucumis sativus (Cucumber) 2Chr7:14060834-14061073+735,8641,130.50UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAShortStack
csa-b2r1-67528Cucumis sativus (Cucumber) 2Chr7:15347493-15347707-8,56313.16UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack