het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica rapa var. pekinensis (Chinese Cabbage) genome build 1 (bra-b1)

Version v1 of Brassica rapa var. pekinensis cv. Chiifu-401-42 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bra-b1r1-258Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:2836919-2836940+3724.00UGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
bra-b1r1-259Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:2836982-2837005+6266.72GCUCACUGCUCUAUCUGUCAGGmiR156nearMIRNAShortStack
bra-b1r1-1343Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:11074333-11074353+3954.24CGGCUCUGAUACCAAUUGAUGmiR845nearMIRNAShortStack
bra-b1r1-2649Brassica rapa var. pekinensis (Chinese Cabbage) 1A01:19424248-19424437-2,38225.58UUGAAGCGAUUUGUAGCGGUUUAnearMIRNAShortStack
bra-b1r1-3951Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:731835-731903-7,19177.23UUGGACUGAAGGGAGCUCCUUmiR319nearMIRNAShortStack
bra-b1r1-4174Brassica rapa var. pekinensis (Chinese Cabbage) 1A02:2981856-2981879+2352.52GCUUACUCUCUCUCUGUCACCmiR156nearMIRNAShortStack
bra-b1r1-7889Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:2163055-2163077+1982.13GCUUACUCUCUCUCUGUCACCmiR156nearMIRNAShortStack
bra-b1r1-9133Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:13630401-13630424+1591.71AGCUGCCUCUGGUCUGAGCUAnearMIRNAShortStack
bra-b1r1-9619Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:17869627-17869651+3503.76GUAUGUAGACGCACUGUUUCUCAnearMIRNAShortStack
bra-b1r1-9625Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:17928771-17928795-2,49826.83UUGACAGAAGAUAGAGAGCACmiR156nearMIRNAShortStack
bra-b1r1-10362Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:23233606-23233675-380.41AAGGUAAUUUUGUAGGUAUAUCAUnearMIRNAShortStack
bra-b1r1-11071Brassica rapa var. pekinensis (Chinese Cabbage) 1A03:28482300-28482324-2012.16GCUCACUGCUCUAUCUGUCAGAmiR156nearMIRNAShortStack
bra-b1r1-11630Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:344437-344466+4184.49UCAUUAGGUUUGGAUUUUGGUmiR9559nearMIRNAShortStack
bra-b1r1-14025Brassica rapa var. pekinensis (Chinese Cabbage) 1A04:17355248-17355355-1,29913.95AUAUGAUAGUAGGAGAAUGUCnearMIRNAShortStack
bra-b1r1-14477Brassica rapa var. pekinensis (Chinese Cabbage) 1A05:2927803-2927824-2933.15UCCAAAGGGAUCGCAUUGAUCCmiR393nearMIRNAShortStack
bra-b1r1-18136Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:8184377-8184614+3864.15UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
bra-b1r1-20177Brassica rapa var. pekinensis (Chinese Cabbage) 1A06:22067830-22067895-1,27213.66GGGGAUGUAGCUCAGAUGGUnearMIRNAShortStack
bra-b1r1-22782Brassica rapa var. pekinensis (Chinese Cabbage) 1A07:14746059-14746168-3944.23UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
bra-b1r1-25650Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:13233661-13233746+1,71018.37UUGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
bra-b1r1-25831Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:14484422-14484497-1,47815.87GGGGAUGUAGCUCAGAUGGUnearMIRNAShortStack
bra-b1r1-26461Brassica rapa var. pekinensis (Chinese Cabbage) 1A08:19941537-19941572+3163.39UAUGGGUGAACUGGCAAAAUCnearMIRNAShortStack
bra-b1r1-30561Brassica rapa var. pekinensis (Chinese Cabbage) 1A09:27851650-27851674+3,90741.96AUCAUGCGAUCUAUUUGGAUUmiR393nearMIRNAShortStack
bra-b1r1-32952Brassica rapa var. pekinensis (Chinese Cabbage) 1A10:9612032-9612168-4,06043.60UUAGCGGAAUAUAAGAAUCGGUUnearMIRNAShortStack
bra-b1r1-35202Brassica rapa var. pekinensis (Chinese Cabbage) 1Scaffold000203:48583-48614-1,76818.99UAAGCUGCCAGCAUGAUCUUGmiR167nearMIRNAShortStack