het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica oleracea var. capitata (Cabbage) genome build 1.0 (bol-b1.0)

Version v1.0 of Brassica oleracea var. capitata cv. 02-12 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bol-b1.0r1-1440Brassica oleracea var. capitata (Cabbage) 1.0C01:27616785-27616921-27,615369.85UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
bol-b1.0r1-1778Brassica oleracea var. capitata (Cabbage) 1.0C01:32390889-32391018-80,1741,073.77UCAGGCAGACUGCUUCAUCUCAMIRNAShortStack
bol-b1.0r1-2259Brassica oleracea var. capitata (Cabbage) 1.0C02:2389684-2389795-1,87625.13UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
bol-b1.0r1-4648Brassica oleracea var. capitata (Cabbage) 1.0C02:43534864-43535004-89211.95CAGCCAAGGAUGACUUGCCGAmiR169MIRNAShortStack
bol-b1.0r1-4969Brassica oleracea var. capitata (Cabbage) 1.0C03:4961059-4961134-49,953669.02UUCGCAGGAGAGAUAGCGCCAmiR391MIRNAShortStack
bol-b1.0r1-5367Brassica oleracea var. capitata (Cabbage) 1.0C03:10686307-10686389+3644.88GCGUAUGAGGAGCCAAGCAUAmiR160MIRNAShortStack
bol-b1.0r1-7711Brassica oleracea var. capitata (Cabbage) 1.0C03:54389747-54389850-135,3441,812.66UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
bol-b1.0r1-7825Brassica oleracea var. capitata (Cabbage) 1.0C03:56791743-56791857+1,87625.13UGAGCCAAAGAUGACUUGCCGmiR169MIRNAShortStack
bol-b1.0r1-8227Brassica oleracea var. capitata (Cabbage) 1.0C04:6676509-6676595+1,37818.46GCGUAUGAGGAGCCAUGCAUAmiR160MIRNAShortStack
bol-b1.0r1-8574Brassica oleracea var. capitata (Cabbage) 1.0C04:13166954-13167068+25,357339.61UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
bol-b1.0r1-10192Brassica oleracea var. capitata (Cabbage) 1.0C04:39968635-39968760+75410.10CCAGUAGUUCGUUAGGUUUGACMIRNAShortStack
bol-b1.0r1-10972Brassica oleracea var. capitata (Cabbage) 1.0C05:12920858-12920937-9,216123.43AUAAAUCCCAAGCAUCAUCCAmiR5654MIRNAShortStack
bol-b1.0r1-15396Brassica oleracea var. capitata (Cabbage) 1.0C07:24398295-24398449+342,1704,582.68UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
bol-b1.0r1-15681Brassica oleracea var. capitata (Cabbage) 1.0C07:28627434-28627518-2433.25GCGUACAAGGAGUCAAGCAUGmiR160MIRNAShortStack
bol-b1.0r1-16494Brassica oleracea var. capitata (Cabbage) 1.0C07:41430778-41430893+1,073,09914,372.00UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
bol-b1.0r1-16756Brassica oleracea var. capitata (Cabbage) 1.0C07:45914538-45914621+6,29684.32UGACAGAAGAGAGGGAGCACmiR156MIRNAShortStack
bol-b1.0r1-17251Brassica oleracea var. capitata (Cabbage) 1.0C08:8283596-8283679-296,8393,975.56CUUUGUCUAUCGUUUGGAAAAGmiR158MIRNAShortStack
bol-b1.0r1-17761Brassica oleracea var. capitata (Cabbage) 1.0C08:18499224-18499342-3,77450.55UAUGGGUGGGGUGGCAAAAUCMIRNAShortStack
bol-b1.0r1-18085Brassica oleracea var. capitata (Cabbage) 1.0C08:24320458-24320609-12,450166.74UCCACCCAUACCAUACAGACCCmiR6030MIRNAShortStack
bol-b1.0r1-18527Brassica oleracea var. capitata (Cabbage) 1.0C08:31929126-31929202-3,01540.38UUAGAUGACCAUCAACAAAUAmiR827MIRNAShortStack
bol-b1.0r1-19620Brassica oleracea var. capitata (Cabbage) 1.0C09:7067583-7067751-47,415635.03UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
bol-b1.0r1-19700Brassica oleracea var. capitata (Cabbage) 1.0C09:8818498-8818657+3,39945.52GCGUACGAGGAGCCAAGCAUGmiR160MIRNAShortStack
bol-b1.0r1-21088Brassica oleracea var. capitata (Cabbage) 1.0C09:33900382-33900510-6428.60GGGUCGAUAUGAGAACACAUGmiR398MIRNAShortStack
bol-b1.0r1-21313Brassica oleracea var. capitata (Cabbage) 1.0C09:37643414-37643490-69,388929.31UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
bol-b1.0r1-21324Brassica oleracea var. capitata (Cabbage) 1.0C09:37847835-37847924+5,82377.99UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
bol-b1.0r1-21444Brassica oleracea var. capitata (Cabbage) 1.0C09:39300321-39300431+10,350138.62AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack