het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Brassica napus (Rapeseed) genome build 1 (bna-b1)

Version v1 of Brassica napus cv. Darmor-bzh from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
bna-b1r1-3461Brassica napus (Rapeseed) 1LK031796:722247-722340-20,95271.84UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-7396Brassica napus (Rapeseed) 1LK031809:331746-332257+2,1037.21ACUCAAACUCAUUGUCGAAUsiRNA20ShortStack
bna-b1r1-8916Brassica napus (Rapeseed) 1LK031815:623852-623952-421,2561,444.39UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-12880Brassica napus (Rapeseed) 1LK031832:302046-302100-2210.76GAUUGAUAUCGAGAGAGUGGsiRNA20ShortStack
bna-b1r1-17333Brassica napus (Rapeseed) 1LK031854:1427087-1427211+77,466265.61UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-17334Brassica napus (Rapeseed) 1LK031854:1427700-1427813+68,109233.53UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-17335Brassica napus (Rapeseed) 1LK031854:1427911-1428041+129,019442.38UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-18514Brassica napus (Rapeseed) 1LK031860:1113062-1113146-3091.06GGGACAAACAGAACGCAAGUsiRNA20ShortStack
bna-b1r1-23647Brassica napus (Rapeseed) 1LK031892:264555-264628+3,78712.99UGACAGAAGGGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-29062Brassica napus (Rapeseed) 1LK031926:593617-593725-2,1187.26UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
bna-b1r1-31663Brassica napus (Rapeseed) 1LK031945:674089-674199.8,81330.22UCGAACAGACAACGAAGAUUmiR858siRNA20ShortStack
bna-b1r1-35336Brassica napus (Rapeseed) 1LK031979:987771-989470+696,2862,387.40GGCGGAUGUAGCCAAGUGGAsiRNA20ShortStack
bna-b1r1-54924Brassica napus (Rapeseed) 1LK032216:397512-397825+110,994380.57UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-55891Brassica napus (Rapeseed) 1LK032233:434006-434363+2,4358.35AAGGAAGCUAUAAGUAAUGAsiRNA20ShortStack
bna-b1r1-58633Brassica napus (Rapeseed) 1LK032281:376065-376174-2,6439.06UUGGCAUUCUGUCCACCUCCmiR394siRNA20ShortStack
bna-b1r1-60042Brassica napus (Rapeseed) 1LK032311:63053-63078+630.22GAUAGAUUCUCUAAAAUGGCsiRNA20ShortStack
bna-b1r1-70870Brassica napus (Rapeseed) 1LK032601:215467-216738.3,41711.72UUUGGAUUGAAGGGAGCUCGmiR159siRNA20ShortStack
bna-b1r1-78052Brassica napus (Rapeseed) 1LK033036:60133-60232.2240.77CGGCUCUGAAAAUAACCGGCsiRNA20ShortStack
bna-b1r1-78872Brassica napus (Rapeseed) 1LK033109:13385-13508+82,435282.65UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-78873Brassica napus (Rapeseed) 1LK033109:20806-21116+488,2321,674.03UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-87157Brassica napus (Rapeseed) 1LK034540:623-796.2360.81GUGGACUUCUCGCGACGUCAsiRNA20ShortStack
bna-b1r1-90832Brassica napus (Rapeseed) 1LK036534:8251-8354-32,168110.30UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-91672Brassica napus (Rapeseed) 1LK037470:1912-1933+1560.54UGGAACAAGAGCAUAAGACAsiRNA20ShortStack
bna-b1r1-92338Brassica napus (Rapeseed) 1LK038451:3252-3280-1,992,8136,832.88UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack
bna-b1r1-93938Brassica napus (Rapeseed) 1LK041483:2692-2721+4,20314.41CGCUGUCCAUCCUGAGUUUCmiR390siRNA20ShortStack
bna-b1r1-95067Brassica napus (Rapeseed) 1LK044137:2306-2499+14,15848.54UGACAGAAGAGAGUGAGCACmiR156siRNA20ShortStack