het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Elaeis guineensis (African Oil Palm) genome build 5.1 (egu-b5.1)

Version v5.1 of Elaeis guineensis cv. Jacq. var. pisifera from The Genomsawit Website

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
egu-b5.1r1-2371Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:44401533-44401608+34,684342.63GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-3059Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:60260131-60260241+3,88838.41CCUUGUGAUGGGAUCUGAAGGCCsiRNA23ShortStack
egu-b5.1r1-4051Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:11223934-11224010-8,48883.85GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-5208Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:159418-159448+4,57945.23AUGGGAAGUGGAGGGAGAAGGGAsiRNA23ShortStack
egu-b5.1r1-6913Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:5486118-5486237+2162.13UAAGAAGAUGGGCAGAUAUUCGUsiRNA23ShortStack
egu-b5.1r1-7071Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:8705650-8705702-1771.75AGAGCACCUGAGGGAGAUCGGsiRNA23ShortStack
egu-b5.1r1-8745Elaeis guineensis (African Oil Palm) 5.1EG_Chr13:5352787-5352898-9919.79UUCGGGACCUGCAUGGGCCACCAsiRNA23ShortStack
egu-b5.1r1-11067Elaeis guineensis (African Oil Palm) 5.1EG_Chr14:20486303-20486377-4,91748.57GGGGAUGUAGCUCAAUUGGUAGAsiRNA23ShortStack
egu-b5.1r1-11686Elaeis guineensis (African Oil Palm) 5.1EG_Chr15:9621300-9621328-10,878107.46GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-12375Elaeis guineensis (African Oil Palm) 5.1EG_Chr15:22047814-22048997-894,5588,836.96GGAAUGGGACUGGAUCGGGAAAUsiRNA23ShortStack
egu-b5.1r1-15008Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:21743195-21743320+4504.45AGAAGGCUUGGUAGAAAAGGAAGsiRNA23ShortStack
egu-b5.1r1-15348Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:26905917-26905994-44,702441.59GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-16604Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:48978676-48978718+4,43943.85CGAGAGACCCGGGUUCGUUUCCCsiRNA23ShortStack
egu-b5.1r1-19609Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:38284389-38284461-35,046346.20GGGGACGUAGCUCAUAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-22531Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:43289726-43289769-3483.44UUUGUAGUACUGUGUCAUGGCAUsiRNA23ShortStack
egu-b5.1r1-25076Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:39768819-39768896+7,23471.46GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-26045Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:4675229-4675410-3353.31UCCGCAGUCUACGUAGAAUAAAAsiRNA23ShortStack
egu-b5.1r1-26812Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:28451854-28451877+1071.06UGAACUAACAUGUCGAUGAUGUAsiRNA23ShortStack
egu-b5.1r1-27967Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:9432111-9432329+4924.86UUCGGGACCUGCAUGGGCCACCAsiRNA23ShortStack
egu-b5.1r1-28986Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:30015583-30015619+130.13GUGGAUCUUGGGAUGGGAGUGGGsiRNA23ShortStack
egu-b5.1r1-32295Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:9623564-9623678+3893.84UUAGUUGGUGAAUUCGAGGCAAUsiRNA23ShortStack
egu-b5.1r1-33061Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:30078778-30078850-2462.43GGAGGAGAGAGAAGAGGAGCAAGsiRNA23ShortStack
egu-b5.1r1-39688Elaeis guineensis (African Oil Palm) 5.1p5_sc00324:241625-241737-27,885275.46GGGGAUGUAGCUCAAAUGGUAGAsiRNA23ShortStack
egu-b5.1r1-41310Elaeis guineensis (African Oil Palm) 5.1p5_sc00449:563461-563495+2632.60CGAGAGUAGUACUGGGAUGGGUGsiRNA23ShortStack
egu-b5.1r1-42919Elaeis guineensis (African Oil Palm) 5.1p5_sc00762:31761-31790+3263.22UUUCGAUCGAAUGGAUGUCCACCsiRNA23ShortStack
egu-b5.1r1-43298Elaeis guineensis (African Oil Palm) 5.1p5_sc00902:271167-271192-3363.32CUGGGAAGUCCUCGUGUUGCAUCsiRNA23ShortStack
egu-b5.1r1-44624Elaeis guineensis (African Oil Palm) 5.1p5_sc02099:4175-4358-1,07110.58AAAGGAAAAGAGGUUGAAGCAUGsiRNA23ShortStack
egu-b5.1r1-44832Elaeis guineensis (African Oil Palm) 5.1p5_sc02525:9459-9570-1901.88GCCCUUCGUGCGCGGACGUCGGAsiRNA23ShortStack
egu-b5.1r1-45677Elaeis guineensis (African Oil Palm) 5.1p5_sc05612:7470-7606+9139.02UUAGUUGGUGAAUUCGAGGCAAUsiRNA23ShortStack
egu-b5.1r1-46104Elaeis guineensis (African Oil Palm) 5.1p5_sc08098:379-406+2292.26AGAGACCCCGAAAUGAAGACUCAsiRNA23ShortStack
egu-b5.1r1-46399Elaeis guineensis (African Oil Palm) 5.1p5_sc09661:3281-3450.1,13911.25GUGAUGGGCGAACGACGGGAAUUsiRNA23ShortStack
egu-b5.1r1-46653Elaeis guineensis (African Oil Palm) 5.1p5_sc11075:7904-7948.1551.53AGGGGGUUCGGCAUCCGCGUCCCsiRNA23ShortStack