het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Elaeis guineensis (African Oil Palm) genome build 5.1 (egu-b5.1)

Version v5.1 of Elaeis guineensis cv. Jacq. var. pisifera from The Genomsawit Website

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
egu-b5.1r1-809Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:14524859-14525128-2,73226.99UUCUUGUGGAAAAUGGAGCAUGsiRNA22ShortStack
egu-b5.1r1-1100Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:20389750-20390119.3903.85UAAAGAUUAGAAUGUGUCGGCAsiRNA22ShortStack
egu-b5.1r1-1460Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:27943363-27943662.6416.33UAGACGUAGAUAAAGCACGACGsiRNA22ShortStack
egu-b5.1r1-2180Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:41090963-41091122-88,990879.09UGAAGCUGCCAGCAUGAUCUGAmiR167siRNA22ShortStack
egu-b5.1r1-2422Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:45538905-45539061+1,75717.36UUAGAUCGGCCAGGGAAGAAAUsiRNA22ShortStack
egu-b5.1r1-2423Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:45539248-45539285+1461.44UCUUUCCAUGGUCGGUCCAACCsiRNA22ShortStack
egu-b5.1r1-4394Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:17091892-17092603.4,94848.88UGAAAGGCCUCGAUCUACCAUUsiRNA22ShortStack
egu-b5.1r1-5190Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:31498856-31498945-19,050188.19UGAAGCUGCCAGCAUGAUCUGAmiR167siRNA22ShortStack
egu-b5.1r1-5642Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:10876092-10876167+5365.30UCCCUAUUGGAUUCGGGCUAGCsiRNA22ShortStack
egu-b5.1r1-7346Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:12402344-12402423-2,03020.05CUCCAAAGGGAUCGCAUUGAUCmiR393siRNA22ShortStack
egu-b5.1r1-13861Elaeis guineensis (African Oil Palm) 5.1EG_Chr16:20084802-20084950.1,20411.89UUUGAGACAAGCAUAUGACUACsiRNA22ShortStack
egu-b5.1r1-15921Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:37455563-37455608+590.58AAUGUUUGAAUUGCAUGGUAACsiRNA22ShortStack
egu-b5.1r1-18278Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:13080932-13081059.1,98219.58UCGAGGACCGGAAUACCGCGGAsiRNA22ShortStack
egu-b5.1r1-19478Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:34327968-34327990-1671.65UUUCCAAUACCUUCCAUGCCAAsiRNA22ShortStack
egu-b5.1r1-21822Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:29513270-29513411+13,330131.68UCGGGUAUCGAGGAAGAUUUCAsiRNA22ShortStack
egu-b5.1r1-21984Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:32913040-32913208-18,417181.93UGUGAUGAAGAUAUAUGAACUCsiRNA22ShortStack
egu-b5.1r1-22943Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:52438479-52438573+1,16311.49UCGAGGAUCGAGAUACCGCGGAsiRNA22ShortStack
egu-b5.1r1-22966Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:53049322-53049459+1381.36UCAGUUAUUCCUGAGUAGCAUGsiRNA22ShortStack
egu-b5.1r1-23838Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:12413951-12414433-1,64316.23GUACGGGGAUGAUACGGAUUGGsiRNA22ShortStack
egu-b5.1r1-25316Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:43309061-43309132+1361.34UGAGGUCCUGCUUGCGUUCAUUUsiRNA22ShortStack
egu-b5.1r1-26396Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:13468669-13468690-2432.40UUUGGAUUGAAGGGAGUUUUUUsiRNA22ShortStack
egu-b5.1r1-27193Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:37783557-37783702+1311.29GCAUAUAACUCAUAUCUGACGCsiRNA22ShortStack
egu-b5.1r1-27378Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:42584088-42584238-1,25112.36UGCAAGUGAACCGGGGCAAAUUsiRNA22ShortStack
egu-b5.1r1-27665Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:2552218-2552356-3583.54UAAUUUCAAGUGAUCGGAUAUUsiRNA22ShortStack
egu-b5.1r1-28568Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:19898160-19898793+3,27132.31UAGGCACGUGGUGGAUUUCAUCsiRNA22ShortStack
egu-b5.1r1-28570Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:19923291-19923605-6055.98UCAGCAUCAGAUCGUCGUAGACsiRNA22ShortStack
egu-b5.1r1-29475Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:39499038-39499190-3,92638.78UGAAGCUGCCAGCAUGAUCUGGmiR167siRNA22ShortStack
egu-b5.1r1-30488Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:18217456-18217598-2122.09UCUCGUCCGGACUCUUACGGGAsiRNA22ShortStack
egu-b5.1r1-30870Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:24827771-24828132+132,2971,306.91UAAUGGUGGAGAUCCUUGUCGGsiRNA22ShortStack
egu-b5.1r1-32291Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:9190858-9190944+115,9571,145.49CUGACAACGAGAGAGAGCACGCmiR535siRNA22ShortStack
egu-b5.1r1-34702Elaeis guineensis (African Oil Palm) 5.1p5_sc00067:2486243-2486372+1501.48UUUUUUUUGAGAAAACGCCAUUsiRNA22ShortStack
egu-b5.1r1-36154Elaeis guineensis (African Oil Palm) 5.1p5_sc00119:999418-999514.2492.46UAGAAUUGAACAUAUAUGCAUGsiRNA22ShortStack
egu-b5.1r1-37146Elaeis guineensis (African Oil Palm) 5.1p5_sc00208:930507-930673-6156.08GUACGGGGAUGAUACGGAUUGGsiRNA22ShortStack
egu-b5.1r1-37340Elaeis guineensis (African Oil Palm) 5.1p5_sc00211:1014956-1014985+3723.68AAGGAGAGAGGUAGAGGAGGGAsiRNA22ShortStack
egu-b5.1r1-39027Elaeis guineensis (African Oil Palm) 5.1p5_sc00289:873383-873462-1,30512.89UCCUACAAGAACGAUGAUGCUUsiRNA22ShortStack
egu-b5.1r1-39842Elaeis guineensis (African Oil Palm) 5.1p5_sc00329:482162-483237-3,47034.28UUUGAGGAAGAAGCUUGAGUCGsiRNA22ShortStack
egu-b5.1r1-40378Elaeis guineensis (African Oil Palm) 5.1p5_sc00365:8478-8563-7447.35UUCUGAGACACAUGAGACUACGsiRNA22ShortStack
egu-b5.1r1-40959Elaeis guineensis (African Oil Palm) 5.1p5_sc00408:120557-120582+6366.28UGUUACGUUUCCAUAUUAAAGUsiRNA22ShortStack
egu-b5.1r1-41163Elaeis guineensis (African Oil Palm) 5.1p5_sc00436:408703-408851-2,64726.15UGUGUUAAAGUAUCCUAGGACAsiRNA22ShortStack
egu-b5.1r1-41408Elaeis guineensis (African Oil Palm) 5.1p5_sc00459:447344-447366-1,90118.78UGGAAUGUAAAGAAGUAUGGAGmiR1siRNA22ShortStack
egu-b5.1r1-42483Elaeis guineensis (African Oil Palm) 5.1p5_sc00656:13440-13462+10,158100.35UCUGGGAUUUGGACUGUGAGGCsiRNA22ShortStack
egu-b5.1r1-43274Elaeis guineensis (African Oil Palm) 5.1p5_sc00894:58277-58771-12,386122.36UCAGAGUAGUAGCUUCGGGCUUsiRNA22ShortStack
egu-b5.1r1-44423Elaeis guineensis (African Oil Palm) 5.1p5_sc01803:19600-19855.1,59815.79UUUGAGACAAGCAUAUGACUACsiRNA22ShortStack
egu-b5.1r1-45369Elaeis guineensis (African Oil Palm) 5.1p5_sc04065:16104-16140+1991.97UCGACUUAUGUAGUAGAUCGGUsiRNA22ShortStack
egu-b5.1r1-45619Elaeis guineensis (African Oil Palm) 5.1p5_sc05207:4391-4439+2372.34CAGCGAUGGUAUAGAGGGGACAsiRNA22ShortStack
egu-b5.1r1-45737Elaeis guineensis (African Oil Palm) 5.1p5_sc05889:1-51-1591.57UCCUACUGUUAGAGAAGUCCGGsiRNA22ShortStack
egu-b5.1r1-45901Elaeis guineensis (African Oil Palm) 5.1p5_sc06984:6367-6553-5185.12UCCGGAAGGAAUUAUCGUGGAGsiRNA22ShortStack
egu-b5.1r1-46733Elaeis guineensis (African Oil Palm) 5.1p5_sc11531:7026-7174-6416.33ACGUAGACCUCCCAUGUUGCGGsiRNA22ShortStack
egu-b5.1r1-47050Elaeis guineensis (African Oil Palm) 5.1p5_sc13701:2439-2552-2452.42UUGAAUAGAUCCAAGGCACAUCsiRNA22ShortStack
egu-b5.1r1-47392Elaeis guineensis (African Oil Palm) 5.1p5_sc16404:701-732-680.67UCAGUUAUUCCUGAGUAGCAUGsiRNA22ShortStack
egu-b5.1r1-48136Elaeis guineensis (African Oil Palm) 5.1p5_sc22368:2154-2296+1,05610.43GUACGGGGAUGAUACGGAUUGGsiRNA22ShortStack
egu-b5.1r1-48352Elaeis guineensis (African Oil Palm) 5.1p5_sc24963:1454-1601-6346.26UGGGAAGUCCUCGUGUUGCAUCsiRNA22ShortStack
egu-b5.1r1-49323Elaeis guineensis (African Oil Palm) 5.1p5_sc35969:1464-1512+6986.90UCGAGGACCGGAAUACCGCGGAsiRNA22ShortStack
egu-b5.1r1-49384Elaeis guineensis (African Oil Palm) 5.1p5_sc36599:1132-1351+3,13630.98UCGAGGAUCGAGAUACCGCGGAsiRNA22ShortStack
egu-b5.1r1-49616Elaeis guineensis (African Oil Palm) 5.1p5_sc39629:537-568-1231.22AGGUCAGAGAACAUGGAAUGGCsiRNA22ShortStack