het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Elaeis guineensis (African Oil Palm) genome build 5.1 (egu-b5.1)

Version v5.1 of Elaeis guineensis cv. Jacq. var. pisifera from The Genomsawit Website

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
egu-b5.1r1-563Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:8999866-8999952-2642.61GAGGAGAGAGGGUGGUAGGGAUnearMIRNAShortStack
egu-b5.1r1-590Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:9337556-9337805+4554.50AACUUGUCUUUGUAGCUCGGCAUGnearMIRNAShortStack
egu-b5.1r1-1593Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:31173082-31173161+1061.05AUUAGAACUUUUCAGCAUGGGCAUnearMIRNAShortStack
egu-b5.1r1-1890Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:36682658-36682681-4,45644.02UCUGUCGCAGGAGAGAUGGUACnearMIRNAShortStack
egu-b5.1r1-3113Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:61024007-61024035+5995.92UCAUCGAGUGCAGCGUUGAUGmiR397nearMIRNAShortStack
egu-b5.1r1-4643Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:21495150-21495182+7046.96GACGGUCGAUGUCGCGAAAGAAGGnearMIRNAShortStack
egu-b5.1r1-4726Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:23021934-23021956+25,411251.02UGGAGAAGCAGGGCACGUGCUmiR164nearMIRNAShortStack
egu-b5.1r1-6074Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:20181544-20181604+6446.36UAAGACUGGCUUAGACUUAUAnearMIRNAShortStack
egu-b5.1r1-6847Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:4112281-4112302+750.74AGAUGUUCUGGGCCGCACGCnearMIRNAShortStack
egu-b5.1r1-7991Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:22754568-22754595+3,00129.65GUUCAAGAAAGACGUGGGAAAmiR396nearMIRNAShortStack
egu-b5.1r1-13404Elaeis guineensis (African Oil Palm) 5.1EG_Chr16:14689923-14690046-2182.15AGAAGAUUAUGAGGAAUGUCCAGAnearMIRNAShortStack
egu-b5.1r1-14132Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:3019827-3019868-6736.65UCUUUCGCGUGGAGGGACGAUnearMIRNAShortStack
egu-b5.1r1-14270Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:5597025-5597073+1571.55UGGGAUUUGUAUAUAGAGGUGAGGnearMIRNAShortStack
egu-b5.1r1-15003Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:21737088-21737128+4043.99AGUAGAAGUUUCGGGUGCAGGAGUnearMIRNAShortStack
egu-b5.1r1-15514Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:29945386-29945445-2,64726.15GGGAGGACAGUGGGGAGGCCAnearMIRNAShortStack
egu-b5.1r1-15772Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:34405511-34405591-1411.39AAUUGUUGGGUUAGUGGUCGGUGUnearMIRNAShortStack
egu-b5.1r1-17684Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:797965-798074-5865.79UUGACUGGCGUAUUAAACAUGnearMIRNAShortStack
egu-b5.1r1-17853Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:4929407-4929431+3,89738.50UGACAGAAGAGAGUGAGUACmiR156nearMIRNAShortStack
egu-b5.1r1-20443Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:57583146-57583176+10,685105.55UCGGACCAGGCUUCAUUCCUCmiR166nearMIRNAShortStack
egu-b5.1r1-21269Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:15833621-15833654-88,881878.02UGGAAGGGACAUGCAGAGGUGnearMIRNAShortStack
egu-b5.1r1-21496Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:22888956-22889005-1,41613.99CGGAGACGGUGACGGUGGCGUnearMIRNAShortStack
egu-b5.1r1-21732Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:27688711-27688734-220.22AGGAAGUGGUGAACAGCAGAUGAAnearMIRNAShortStack
egu-b5.1r1-22317Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:38507752-38507795-1341.32CGCCCCCGCAUCUCCGCCGGCnearMIRNAShortStack
egu-b5.1r1-22423Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:41276463-41276534-9088.97CGAGCCGAACCAAUAUCACUCmiR171nearMIRNAShortStack
egu-b5.1r1-22832Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:49428576-49428625+3263.22UGGACCACGCCCAGGUAGACUnearMIRNAShortStack
egu-b5.1r1-23662Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:9491037-9491169-21,460211.99UUAGGUUCAGGAAGUAAUGGUGnearMIRNAShortStack
egu-b5.1r1-23857Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:12658785-12658826+3473.43AGGAGGAGGAGGAGGUGGGCCnearMIRNAShortStack
egu-b5.1r1-25857Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:1113308-1113332-4224.17UGUCGCAGGAAAGGUGACACCUnearMIRNAShortStack
egu-b5.1r1-25993Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:3653629-3653650-1,52015.02UGAAGCUGCCAGCAUGAUCUAmiR167nearMIRNAShortStack
egu-b5.1r1-27226Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:38603135-38603373-8828.71UUGACUGGCGUAUUAAACAUGnearMIRNAShortStack
egu-b5.1r1-29120Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:34005803-34005888+1221.21UGACAUUCUGUGGCAUAUUAUGAUnearMIRNAShortStack
egu-b5.1r1-29328Elaeis guineensis (African Oil Palm) 5.1EG_Chr7:37114388-37114408-9699.57GCGUGCAAGGAGCCAAGCAUGmiR160nearMIRNAShortStack
egu-b5.1r1-30631Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:20785942-20786136+1171.16UAAGACGUCAUAAUAUGGACAUAnearMIRNAShortStack
egu-b5.1r1-31507Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:35719865-35719886-9,51694.00UCGAUAAACCUCUGCAUCCGGmiR162nearMIRNAShortStack
egu-b5.1r1-31801Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:221505-221571-1111.10AAAUUUGAACUCUUUGAUCAGGAUnearMIRNAShortStack
egu-b5.1r1-33127Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:31969006-31969135-1,82718.05UGUUGAAGAGGUAGAGAAGCAnearMIRNAShortStack
egu-b5.1r1-33553Elaeis guineensis (African Oil Palm) 5.1p5_sc00010:1997751-1997771-6606.52GCGUGCAAGGAGCCAAGCAUGmiR160nearMIRNAShortStack
egu-b5.1r1-33927Elaeis guineensis (African Oil Palm) 5.1p5_sc00030:2543258-2543295+5,37253.07GCUGGAGUAGCUCAGUUGGUnearMIRNAShortStack
egu-b5.1r1-34324Elaeis guineensis (African Oil Palm) 5.1p5_sc00044:3022966-3022989+11,364112.26UCGAUAAACCUCUGCAUCCGGmiR162nearMIRNAShortStack
egu-b5.1r1-35205Elaeis guineensis (African Oil Palm) 5.1p5_sc00092:143766-143987+1,41313.96AUGACAGAAGAGAGAGAGCACmiR156nearMIRNAShortStack
egu-b5.1r1-36304Elaeis guineensis (African Oil Palm) 5.1p5_sc00129:1707774-1707797+14,185140.13CUGACAGAAGAGAGUGAGCACmiR156nearMIRNAShortStack
egu-b5.1r1-36592Elaeis guineensis (African Oil Palm) 5.1p5_sc00144:2136436-2136459+4,50444.49GCAGGGAUAAGGCAGAGCAUGnearMIRNAShortStack
egu-b5.1r1-36719Elaeis guineensis (African Oil Palm) 5.1p5_sc00171:1533817-1533842+3353.31UUUGAUUGAUUUAGGACAGCAnearMIRNAShortStack
egu-b5.1r1-42100Elaeis guineensis (African Oil Palm) 5.1p5_sc00576:78478-78516-210.21ACCAUGUAUUGAGGACUACGGAUGnearMIRNAShortStack
egu-b5.1r1-42590Elaeis guineensis (African Oil Palm) 5.1p5_sc00675:21795-22014-2,21521.88GAACCGAACCGUACCGACAGAGCAnearMIRNAShortStack
egu-b5.1r1-42647Elaeis guineensis (African Oil Palm) 5.1p5_sc00685:126533-126555-10,834107.02UCUCGGAUCAGGCUUCAUUCCmiR166nearMIRNAShortStack
egu-b5.1r1-43032Elaeis guineensis (African Oil Palm) 5.1p5_sc00801:225552-225577+1711.69UCGAUUUGUAGGAGGGCAGGGnearMIRNAShortStack
egu-b5.1r1-44570Elaeis guineensis (African Oil Palm) 5.1p5_sc02011:1-34+1751.73ACUGACUUGAGCAUCGGAGGGGCCnearMIRNAShortStack
egu-b5.1r1-46820Elaeis guineensis (African Oil Palm) 5.1p5_sc11981:3565-3585-2842.81UGCAUUUGCACCUGCACCUACmiR530nearMIRNAShortStack
egu-b5.1r1-48563Elaeis guineensis (African Oil Palm) 5.1p5_sc27025:1636-1786+1861.84UUGACUGGCGUAUUAAACAUGnearMIRNAShortStack