het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Elaeis guineensis (African Oil Palm) genome build 5.1 (egu-b5.1)

Version v5.1 of Elaeis guineensis cv. Jacq. var. pisifera from The Genomsawit Website

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
egu-b5.1r1-121Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:1804412-1804522+10,227101.03AGAGUCGUGCAGUCUACAGAGMIRNAShortStack
egu-b5.1r1-1123Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:21004204-21004315+445,2004,397.94UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
egu-b5.1r1-1138Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:21268890-21269047+4484.43UUUCCAAUACCUCCCAUUCCAAMIRNAShortStack
egu-b5.1r1-1139Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:21269147-21269297+16,969167.63UUCCCAAUCCCACCCAUUCCUAMIRNAShortStack
egu-b5.1r1-1140Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:21283472-21283634+92,845917.18GGGAUGGGGUUGGUUUGGAAAACMIRNAShortStack
egu-b5.1r1-1141Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:21283774-21283942+62,698619.37UUGCCGAUGCCUCCCAUUCCUAmiR2118MIRNAShortStack
egu-b5.1r1-3284Elaeis guineensis (African Oil Palm) 5.1EG_Chr1:64949091-64949176-2,48324.53GCGUGCGAGGAGCCAAGCAUAmiR160MIRNAShortStack
egu-b5.1r1-3684Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:4758435-4758534+4354.30AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
egu-b5.1r1-3701Elaeis guineensis (African Oil Palm) 5.1EG_Chr10:5571313-5571427+64,123633.44UGGAGAAGCAGGGCACGUGUAmiR164MIRNAShortStack
egu-b5.1r1-5231Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:1595446-1595524+695,0766,866.36UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
egu-b5.1r1-6047Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:19737358-19737460+7397.30AAAUACUCAUGUGGGCAAGAUGMIRNAShortStack
egu-b5.1r1-6101Elaeis guineensis (African Oil Palm) 5.1EG_Chr11:20524464-20524596-171,9711,698.83UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
egu-b5.1r1-7993Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:22760949-22761040+6,28962.13UCCACAGGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-7994Elaeis guineensis (African Oil Palm) 5.1EG_Chr12:22761405-22761493+1,53715.18UCCACAGGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-9271Elaeis guineensis (African Oil Palm) 5.1EG_Chr13:17118781-17118895-102,2101,009.69UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
egu-b5.1r1-10059Elaeis guineensis (African Oil Palm) 5.1EG_Chr14:4109736-4109835+9,02689.16UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
egu-b5.1r1-10338Elaeis guineensis (African Oil Palm) 5.1EG_Chr14:8430347-8430428-400,9863,961.17UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
egu-b5.1r1-12374Elaeis guineensis (African Oil Palm) 5.1EG_Chr15:22041114-22041205-1,620,81316,011.32UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
egu-b5.1r1-12625Elaeis guineensis (African Oil Palm) 5.1EG_Chr16:1614795-1614876-3,33432.94GAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
egu-b5.1r1-12749Elaeis guineensis (African Oil Palm) 5.1EG_Chr16:3961782-3961868-3,88838.41UCCACAGGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-15818Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:35764615-35764701+230,1962,274.01CUGACAACGAGAGAGAGCACGCmiR535MIRNAShortStack
egu-b5.1r1-16168Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:41571101-41571185+2,04920.24UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-16578Elaeis guineensis (African Oil Palm) 5.1EG_Chr2:48573588-48573667-8188.08CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
egu-b5.1r1-17852Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:4922760-4922847+7,650,79575,578.92UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
egu-b5.1r1-20019Elaeis guineensis (African Oil Palm) 5.1EG_Chr3:48881129-48881223-188,6731,863.82UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAShortStack
egu-b5.1r1-21273Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:15930864-15930994-42,923424.02UGGAAGGGGCAUGCAGAGGCGmiR528MIRNAShortStack
egu-b5.1r1-22442Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:41725898-41725999-3,13630.98UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
egu-b5.1r1-22443Elaeis guineensis (African Oil Palm) 5.1EG_Chr4:41731786-41731888-43,823432.91UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
egu-b5.1r1-23506Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:6286216-6286313+5,83657.65UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
egu-b5.1r1-24437Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:28868284-28868377-4,20041.49UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
egu-b5.1r1-25295Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:42903644-42903712-1831.81ACUCUCCCUCAAGGGCUUCUCmiR477MIRNAShortStack
egu-b5.1r1-25378Elaeis guineensis (African Oil Palm) 5.1EG_Chr5:44160134-44160298-496,5044,904.75UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
egu-b5.1r1-25858Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:1113476-1113543-63,645628.72UCAGGAGAGAUGACACCGACmiR1432MIRNAShortStack
egu-b5.1r1-26462Elaeis guineensis (African Oil Palm) 5.1EG_Chr6:18042525-18042606+2332.30UUGAGCCGCGUCAAUAUCUCCmiR171MIRNAShortStack
egu-b5.1r1-29792Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:1181570-1181714-2,17821.52UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-30027Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:5763599-5763668-1,36413.47AGAAGAGAGAGAGUACAGCCUmiR529MIRNAShortStack
egu-b5.1r1-30099Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:7565988-7566076-5,737,66256,679.90UGACAACGAGAGAGAGCACGCmiR535MIRNAShortStack
egu-b5.1r1-31559Elaeis guineensis (African Oil Palm) 5.1EG_Chr8:36592667-36592776+548,7825,421.18CUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
egu-b5.1r1-32902Elaeis guineensis (African Oil Palm) 5.1EG_Chr9:27003876-27003981-6,09060.16UUAGAUGACCAUCAGCAAACGmiR827MIRNAShortStack
egu-b5.1r1-34190Elaeis guineensis (African Oil Palm) 5.1p5_sc00044:1020425-1020522-497,9854,919.38CUGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
egu-b5.1r1-35435Elaeis guineensis (African Oil Palm) 5.1p5_sc00093:2494104-2494185-253,9842,509.00UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
egu-b5.1r1-35834Elaeis guineensis (African Oil Palm) 5.1p5_sc00109:1049042-1049228-3,21631.77UUCAUGCUCUUGAUCGCCAUGMIRNAShortStack
egu-b5.1r1-40132Elaeis guineensis (African Oil Palm) 5.1p5_sc00349:327653-327731-5855.78UUCCACAGCUUUCUUGAACUGmiR396MIRNAShortStack
egu-b5.1r1-40559Elaeis guineensis (African Oil Palm) 5.1p5_sc00379:568080-568160+19,702194.63AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
egu-b5.1r1-42166Elaeis guineensis (African Oil Palm) 5.1p5_sc00590:420946-421034-6266.18UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
egu-b5.1r1-42448Elaeis guineensis (African Oil Palm) 5.1p5_sc00653:189740-189878-296,6162,930.14UGACAACGAGAGAGAGCACGCmiR535MIRNAShortStack
egu-b5.1r1-43141Elaeis guineensis (African Oil Palm) 5.1p5_sc00850:68593-68671-1,39813.81CGGCAUCAUCUAUCUGCGGAGMIRNAShortStack
egu-b5.1r1-44115Elaeis guineensis (African Oil Palm) 5.1p5_sc01505:7726-7800-5,25151.87AGAAGAGAGAGAGUACAGCCUmiR529MIRNAShortStack
egu-b5.1r1-44128Elaeis guineensis (African Oil Palm) 5.1p5_sc01514:21460-21574+322,5143,185.98UGGAAGGGGCAUGCAGAGGAGmiR528MIRNAShortStack