het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Physcomitrella patens (Spreading Earthmoss) genome build 3.0 (ppt-b3.0)

Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppt-b3.0r4-241Physcomitrella patens (Spreading Earthmoss) 3.0Chr01:10812164-10812361+890.61ACACGGACCAUAUGAUUGUGCCsiRNA22ShortStack
ppt-b3.0r4-584Physcomitrella patens (Spreading Earthmoss) 3.0Chr01:21050949-21050973-910.62GUUAAUGAUGUCGAUGAAACGAsiRNA22ShortStack
ppt-b3.0r4-1144Physcomitrella patens (Spreading Earthmoss) 3.0Chr02:15193149-15193207+870.60ACCACCAUCUGUAGUAAUCGUUsiRNA22ShortStack
ppt-b3.0r4-1616Physcomitrella patens (Spreading Earthmoss) 3.0Chr03:9686394-9686422-780.54AGAAAGGAAGUCUCUGGAAUCUsiRNA22ShortStack
ppt-b3.0r4-1698Physcomitrella patens (Spreading Earthmoss) 3.0Chr03:12937598-12937678+1130.78GUCCUUGAUUCAUCGUUCUUAGsiRNA22ShortStack
ppt-b3.0r4-1928Physcomitrella patens (Spreading Earthmoss) 3.0Chr03:21620402-21620564.1230.84UGUCCAGUCUCUCCACGGCCCGmiR1042siRNA22ShortStack
ppt-b3.0r4-2066Physcomitrella patens (Spreading Earthmoss) 3.0Chr04:1949522-1949662+2952.02UGUCUAGUCUCUCCACGGCCCGmiR1042siRNA22ShortStack
ppt-b3.0r4-2167Physcomitrella patens (Spreading Earthmoss) 3.0Chr04:5401260-5401388+3932.70UUUCUUGACUUACGUUGCGAAGsiRNA22ShortStack
ppt-b3.0r4-2950Physcomitrella patens (Spreading Earthmoss) 3.0Chr05:16401661-16401690-1,50310.31AUGCAACUUGUAUGGACAGAGUmiR534siRNA22ShortStack
ppt-b3.0r4-3196Physcomitrella patens (Spreading Earthmoss) 3.0Chr06:6887150-6887403+1110.76UUUCAUAGAAGCCGGUAACUCCsiRNA22ShortStack
ppt-b3.0r4-3679Physcomitrella patens (Spreading Earthmoss) 3.0Chr07:10850561-10850908.1360.93UGCAGGGAAAUCGGAGUGUUUCsiRNA22ShortStack
ppt-b3.0r4-3682Physcomitrella patens (Spreading Earthmoss) 3.0Chr07:10853544-10853890.1601.10UGCAGGGAAAUCGGAGUGUUUCsiRNA22ShortStack
ppt-b3.0r4-4547Physcomitrella patens (Spreading Earthmoss) 3.0Chr10:2060320-2061479-17,579120.55UCCAAGCACUUAUCGCACCCUGmiR1076siRNA22ShortStack
ppt-b3.0r4-4599Physcomitrella patens (Spreading Earthmoss) 3.0Chr10:3588198-3589711-126,605868.21UUGCUGUGCACUACUUAGUACAmiR898siRNA22ShortStack
ppt-b3.0r4-5272Physcomitrella patens (Spreading Earthmoss) 3.0Chr11:13599217-13599460-3322.28ACGGACACAAAAUACAGACUUUsiRNA22ShortStack
ppt-b3.0r4-5491Physcomitrella patens (Spreading Earthmoss) 3.0Chr12:5501140-5501187-369,0042,530.48UCGUGCCAAGCUGUGUGCAACCmiR536siRNA22ShortStack
ppt-b3.0r4-6184Physcomitrella patens (Spreading Earthmoss) 3.0Chr14:2423566-2424572+10,28270.51UUGCUGUGCACUACUUAGUACGmiR898siRNA22ShortStack
ppt-b3.0r4-6224Physcomitrella patens (Spreading Earthmoss) 3.0Chr14:3915570-3915654+1410.97UGCCAAAAUCAAUCAACUCGACmiR11325siRNA22ShortStack
ppt-b3.0r4-7199Physcomitrella patens (Spreading Earthmoss) 3.0Chr16:5980044-5980486-330,2672,264.84AUGCAACUUGUGUGGACAGACUmiR534siRNA22ShortStack
ppt-b3.0r4-7205Physcomitrella patens (Spreading Earthmoss) 3.0Chr16:6570518-6571062+6,80346.65UGGCCCAUGCACAGUAUCUACGmiR1221siRNA22ShortStack
ppt-b3.0r4-7456Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:3664370-3664463-1030.71UCCGGGUACCUAGCUGUAGAAGsiRNA22ShortStack
ppt-b3.0r4-7522Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:6870700-6871019-950.65CAUUCUGAGAAUAAUCAUCCGAmiR1064siRNA22ShortStack
ppt-b3.0r4-8319Physcomitrella patens (Spreading Earthmoss) 3.0Chr19:9893721-9894020-840.58CAGGUACUGUGAGUCUAUGAUAsiRNA22ShortStack
ppt-b3.0r4-9119Physcomitrella patens (Spreading Earthmoss) 3.0Chr21:9958135-9958757-1290.89AGAGCCGUGGACAGUUGUGACCsiRNA22ShortStack
ppt-b3.0r4-9312Physcomitrella patens (Spreading Earthmoss) 3.0Chr22:5713268-5713668.940.65ACCGGAUCUCAUAACUUACAGsiRNA22ShortStack
ppt-b3.0r4-9501Physcomitrella patens (Spreading Earthmoss) 3.0Chr23:1247944-1248248+40,340276.64UCGUGCCAAGCUGUGUGCAACCmiR536siRNA22ShortStack
ppt-b3.0r4-9510Physcomitrella patens (Spreading Earthmoss) 3.0Chr23:2549678-2550392-134,848924.73UCGUGCCAAGCUGUGUGCAACCmiR536siRNA22ShortStack
ppt-b3.0r4-9913Physcomitrella patens (Spreading Earthmoss) 3.0Chr24:4637582-4638001+8515.84CACGUCAACGCCAUUGCUGCCUsiRNA22ShortStack
ppt-b3.0r4-9923Physcomitrella patens (Spreading Earthmoss) 3.0Chr24:5312791-5313480+41,440284.18UCGUGCCAAGCUGUGUGCAACCmiR536siRNA22ShortStack