het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Physcomitrella patens (Spreading Earthmoss) genome build 3.0 (ppt-b3.0)

Version 3.0 genome build from Phytozome 10 along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
ppt-b3.0r4-377Physcomitrella patens (Spreading Earthmoss) 3.0Chr01:15203952-15204101-27,635189.51UCUGGUUGGAUUGUAGGCCUmiR1024nearMIRNAShortStack
ppt-b3.0r4-815Physcomitrella patens (Spreading Earthmoss) 3.0Chr02:1280237-1280298-10,52372.16UCUUAGAUCUACAAUGCCUCUmiR1028nearMIRNAShortStack
ppt-b3.0r4-1086Physcomitrella patens (Spreading Earthmoss) 3.0Chr02:12910639-12910875-294,2222,017.66UCUGGUUGGAUUGUAGGCCUmiR1024nearMIRNAShortStack
ppt-b3.0r4-1451Physcomitrella patens (Spreading Earthmoss) 3.0Chr03:1701959-1701992-1040.71UACCUUGACAAAUGUGACUAGnearMIRNAShortStack
ppt-b3.0r4-1673Physcomitrella patens (Spreading Earthmoss) 3.0Chr03:11924038-11924081+1,62811.16UAUACUGAUUUGUGUGGGUUUCAGnearMIRNAShortStack
ppt-b3.0r4-3409Physcomitrella patens (Spreading Earthmoss) 3.0Chr06:18848981-18849151+4,11228.20UUUGGAUGAUUCAAUUGUGAUmiR1078nearMIRNAShortStack
ppt-b3.0r4-4541Physcomitrella patens (Spreading Earthmoss) 3.0Chr10:1725886-1725937+1,0797.40GUGCGGGUUCUUAUGCAGAACmiR1030nearMIRNAShortStack
ppt-b3.0r4-5157Physcomitrella patens (Spreading Earthmoss) 3.0Chr11:9177916-9178124+6,86947.11ACGAAGGUCUGCAUCAUAGUmiR902nearMIRNAShortStack
ppt-b3.0r4-5214Physcomitrella patens (Spreading Earthmoss) 3.0Chr11:11452727-11452757-4,83633.16CAUCUUGGAGUACUGCAUCUUmiR1063nearMIRNAShortStack
ppt-b3.0r4-5490Physcomitrella patens (Spreading Earthmoss) 3.0Chr12:5498641-5498828+1941.33UUCCUGUCUACUUGAAGCCACmiR1051nearMIRNAShortStack
ppt-b3.0r4-5511Physcomitrella patens (Spreading Earthmoss) 3.0Chr12:6377735-6377755+900.62CUGGAAGUCUUUGUUGAAUUnearMIRNAShortStack
ppt-b3.0r4-5857Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:4841430-4841697+87,666601.18UUUUAGUUUUGUUGUGGGCUmiR1025nearMIRNAShortStack
ppt-b3.0r4-5899Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:7045428-7045545-1240.85AUUCCAAAUUUUAUCAUCACAAUGnearMIRNAShortStack
ppt-b3.0r4-5927Physcomitrella patens (Spreading Earthmoss) 3.0Chr13:8730385-8730642-2761.89UGUUUCAGUCAUGGUUUCUACmiR1075nearMIRNAShortStack
ppt-b3.0r4-6151Physcomitrella patens (Spreading Earthmoss) 3.0Chr14:495775-495814-3,40923.38GUGCGGGUUCUUAUGCAGAGCmiR1030nearMIRNAShortStack
ppt-b3.0r4-6152Physcomitrella patens (Spreading Earthmoss) 3.0Chr14:495892-495970-6,70045.95UCUGCAUCUGCACCUGCACCAmiR1030nearMIRNAShortStack
ppt-b3.0r4-6488Physcomitrella patens (Spreading Earthmoss) 3.0Chr14:14350675-14350970+1861.28CGGGAGAUCUGUCGCGAUGCCmiR11326nearMIRNAShortStack
ppt-b3.0r4-7521Physcomitrella patens (Spreading Earthmoss) 3.0Chr17:6852051-6852232+2581.77AUUACUUUGGCAGCGUUGUGCmiR1034nearMIRNAShortStack
ppt-b3.0r4-8977Physcomitrella patens (Spreading Earthmoss) 3.0Chr21:5595048-5595187+2601.78UUGGACAUGUCAGACAAGCCCnearMIRNAShortStack
ppt-b3.0r4-9191Physcomitrella patens (Spreading Earthmoss) 3.0Chr21:13954646-13954730-50,977349.58ACGAAGGUCUGCAUCAUAGUmiR902nearMIRNAShortStack
ppt-b3.0r4-10405Physcomitrella patens (Spreading Earthmoss) 3.0Chr26:4349178-4349214-9586.57UCUGCAUCUGCACCUGCACCAmiR1030nearMIRNAShortStack