| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| ghr-b1.1r1-496 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:2548043-2548075 | + | 345 | 0.37 | AUUUGGGGCUUAGUAGACAAGGUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-1449 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:13791598-13791618 | - | 56 | 0.06 | UCUUUAACUUGCCUUUGCCUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-2535 | Gossypium hirsutum (Upland Cotton) 1.1 | A01:83560909-83561069 | - | 2,836 | 3.06 | AUGAGCUAGAAGUUGGAACUC | miR8632 | nearMIRNA | ShortStack |
| ghr-b1.1r1-4030 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:8934-8968 | - | 882 | 0.95 | UCCCAAGCUAGAACAUAUGA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-5723 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:16270394-16270414 | - | 349 | 0.38 | UAGAAUAGGAAUAUAGAACCU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-7018 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:81707051-81707160 | + | 685 | 0.74 | CUACCAAAGGAAAUAUGGACA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-7309 | Gossypium hirsutum (Upland Cotton) 1.1 | A02:83008278-83008522 | + | 747 | 0.81 | AGGCGACAAUGUGGCACAAUCUUA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-8045 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:3924364-3924393 | - | 443 | 0.48 | UGCAUUUGCACCUGCACCUUC | miR530 | nearMIRNA | ShortStack |
| ghr-b1.1r1-8154 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:4779751-4779776 | + | 335 | 0.36 | UUUGCUUGGUAUGAAGAAUGGAAA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-8366 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:6924202-6924228 | + | 4,268 | 4.61 | GCGGCAUUAUCAAGAUUCACA | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-8367 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:6924329-6924349 | + | 532 | 0.58 | GGAAUCUUGAUGAUGCUGCAU | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-8429 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:7586902-7586986 | - | 885 | 0.96 | UAAAAUAAGUUGGCGUGGCAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-8564 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:10063298-10063467 | + | 2,984 | 3.22 | AGGUCCUGACCUUUGGCGGCGUUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-8682 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:12512944-12512966 | + | 904 | 0.98 | UGAAGAAAAAUACUGACAGUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-10167 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:91662903-91662972 | + | 730 | 0.79 | UCGCAUGCUUGCGUGGAACCAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-10275 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:93332592-93332641 | + | 341 | 0.37 | AUGACUAUUUUAGUGAAGACUGCG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-10397 | Gossypium hirsutum (Upland Cotton) 1.1 | A03:94582448-94582469 | - | 353 | 0.38 | ACUCUCCUUCAAAGGCUUCAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-11717 | Gossypium hirsutum (Upland Cotton) 1.1 | A04:2363129-2363233 | + | 245 | 0.27 | AAUCAGCAUCGAGGGAUCUUA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-12752 | Gossypium hirsutum (Upland Cotton) 1.1 | A04:41516490-41516582 | + | 344 | 0.37 | AGAAUCUUGAUGAUGCUGCAUU | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-15064 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:9151191-9151214 | + | 389 | 0.42 | AGGUGCAGGUGCAGGCGCAGC | miR530 | nearMIRNA | ShortStack |
| ghr-b1.1r1-16475 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:21862736-21862992 | + | 818 | 0.88 | AAAGGUCGCGGCUUUUAGAGGCGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-16727 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:24831156-24831285 | - | 2,833 | 3.06 | UUGGCAUUCUGUCCACCUCG | miR394 | nearMIRNA | ShortStack |
| ghr-b1.1r1-17649 | Gossypium hirsutum (Upland Cotton) 1.1 | A05:36089447-36089515 | - | 38,186 | 41.25 | GCGUAUGAGGAGCCAUGCAUG | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-20345 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:1466757-1466880 | - | 928 | 1.00 | AUACGUGGACUGUCAUACAAGUGA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-21532 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:17608431-17608452 | + | 3,658 | 3.95 | UGACAGAAGAGAGGGAGCAC | miR156 | nearMIRNA | ShortStack |
| ghr-b1.1r1-22140 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:67405226-67405257 | - | 330 | 0.36 | GAUUAUGUGACAUCGGAUCAGUGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-22375 | Gossypium hirsutum (Upland Cotton) 1.1 | A06:91488317-91488461 | + | 243 | 0.26 | AAAUUGUAGAAGGUGAUAUUGGCU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-23981 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:1709171-1709195 | + | 288 | 0.31 | AUAGGUAAUCUGAACCUGAUGUGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-24184 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:2829564-2829585 | - | 554 | 0.60 | UUCCACAGCUUUCUUGAACUG | miR396 | nearMIRNA | ShortStack |
| ghr-b1.1r1-25894 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:19933770-19933828 | - | 969 | 1.05 | AGUAUCGGGCUGAGUCGGAUAUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-26947 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:66335035-66335155 | + | 1,647 | 1.78 | CACCGGUCUGCUCGUCCCUAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-27654 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:74519697-74519721 | + | 5,416 | 5.85 | UGAAGCUGCCAGCAUGAUCUAA | miR167 | nearMIRNA | ShortStack |
| ghr-b1.1r1-28180 | Gossypium hirsutum (Upland Cotton) 1.1 | A07:77903836-77903942 | - | 535 | 0.58 | UAGCCAAGAAUGACUUGCCUG | miR169 | nearMIRNA | ShortStack |
| ghr-b1.1r1-28289 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:427401-427461 | - | 378 | 0.41 | CAAAUUAGUCCCUGUAUGUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-28522 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:1511129-1511191 | - | 3,343 | 3.61 | UCAAACAAGCUGGGGAACAAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-29076 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:5089159-5089283 | + | 453 | 0.49 | AGGACUUUUCAAGCGUAUGAUUGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-30021 | Gossypium hirsutum (Upland Cotton) 1.1 | A08:54225832-54225853 | + | 79 | 0.09 | CGUGAUAUUGCUUCUGCUCAUC | miR171 | nearMIRNA | ShortStack |
| ghr-b1.1r1-32598 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:1174712-1174871 | - | 1,455 | 1.57 | AUUGGAUUGGUUAGUAGUGUCAUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-33050 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:6698824-6698847 | - | 863 | 0.93 | UCUGUCGCAGGGGAGAUGGCUG | miR3267 | nearMIRNA | ShortStack |
| ghr-b1.1r1-33053 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:6739477-6739501 | + | 370 | 0.40 | CUGUCGCAGGGGAGAUGGCUCG | miR3267 | nearMIRNA | ShortStack |
| ghr-b1.1r1-33352 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:24515491-24515528 | + | 451 | 0.49 | UUUGCUUGGUAGGAAGGAUGGAAA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-33831 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:51336235-51336451 | + | 1,730 | 1.87 | AUACGUGGACUGUUAUGUGGGUUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-36134 | Gossypium hirsutum (Upland Cotton) 1.1 | A09:72671676-72671787 | - | 6,284 | 6.79 | ACCGUGUUACUCUGUCUAAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-39454 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:87853724-87853745 | - | 293 | 0.32 | UUAGGCCAUCGGAAAUUGCUCC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-39990 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:93959549-93959574 | + | 487 | 0.53 | GCAGCAUCUUCAAGAUUCACA | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-40052 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:94600550-94600616 | - | 5,257 | 5.68 | GCGUAUGAGGAGUCAAGCAUA | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-40367 | Gossypium hirsutum (Upland Cotton) 1.1 | A10:97443173-97443228 | + | 610 | 0.66 | AGAUGGCUGGCGACUGUGUUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-41867 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:6772067-6772101 | - | 473 | 0.51 | AGGAUAAAAUUACUGAUGCGGCAU | miR7504 | nearMIRNA | ShortStack |
| ghr-b1.1r1-41941 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:7307988-7308015 | - | 119 | 0.13 | AGCGAGUAUUGAAGAAGAAAAGAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-42357 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:11739601-11739625 | + | 5,887 | 6.36 | UGGAGAAGCAGGGCACGUGCA | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-42358 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:11739669-11739696 | + | 126 | 0.14 | CACGUGCUCCCUUUCUCCAAC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-44311 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:67039011-67039130 | + | 4,679 | 5.05 | UCUCGGACCAGGCUUCAUUCC | miR166 | nearMIRNA | ShortStack |
| ghr-b1.1r1-45245 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:83598730-83599019 | + | 7,424 | 8.02 | AGGAUAAGAAUACUGACGUGGCAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-45470 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:85680753-85680827 | + | 926 | 1.00 | AAGGAGAAGAGUUAUUGUGAAUGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-46247 | Gossypium hirsutum (Upland Cotton) 1.1 | A11:92263318-92263340 | + | 370 | 0.40 | GGUCAAUCAUUGUUUCUGCUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-48060 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:59145021-59145057 | + | 1,710 | 1.85 | UUUGGAUUGAAGGGAGCUCA | miR159 | nearMIRNA | ShortStack |
| ghr-b1.1r1-48725 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:65704330-65704350 | + | 360 | 0.39 | CACGUGCUCCCCUUCUCCAAC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-49098 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:70809083-70809248 | - | 2,036 | 2.20 | ACUUGAUUCAGACUGGUAGGCAUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-49508 | Gossypium hirsutum (Upland Cotton) 1.1 | A12:75824380-75824408 | - | 400 | 0.43 | CUGAGUCGGAUAUAGUUGGCAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-52403 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:16894431-16894498 | + | 1,054 | 1.14 | GUUCCUCUGAUCACUUCAUUG | miR395 | nearMIRNA | ShortStack |
| ghr-b1.1r1-54546 | Gossypium hirsutum (Upland Cotton) 1.1 | A13:76748908-76748933 | - | 1,082 | 1.17 | GUUCAAUAAAGCUGUGGGAAG | miR396 | nearMIRNA | ShortStack |
| ghr-b1.1r1-56352 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:9270669-9270733 | + | 270 | 0.29 | AAGGUCAUGGUCUUUAGCGGUGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-56443 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:9942337-9942356 | - | 352 | 0.38 | UGAGUGCAUUCUUAUCAGAAC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-56494 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:10509126-10509308 | - | 2,893 | 3.13 | AAGGAUGAAAUUACUGAUGUGGCA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-56899 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:15216348-15216489 | - | 2,104 | 2.27 | UUGGCAUUCUGUCCACCUCC | miR394 | nearMIRNA | ShortStack |
| ghr-b1.1r1-58322 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:54197649-54197675 | + | 52,031 | 56.20 | UCGGACCAGGCUUCAUUCCCA | miR166 | nearMIRNA | ShortStack |
| ghr-b1.1r1-58409 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:55009701-55009851 | - | 1,331 | 1.44 | ACUAAAUUGGAGCUCGAUUGACGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-59268 | Gossypium hirsutum (Upland Cotton) 1.1 | D01:60193272-60193294 | + | 821 | 0.89 | AGAAUCCUGAUGAUGCUGCAC | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-61605 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:12759244-12759437 | - | 310 | 0.34 | AAGGUCUUGGUCUUUAGCGGCGAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-61672 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:13695485-13695505 | - | 487 | 0.53 | UUUGGAUUGAGGGGAGCUCU | miR159 | nearMIRNA | ShortStack |
| ghr-b1.1r1-61721 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:14552937-14552957 | - | 334 | 0.36 | UAGAAUAGGAAUAUAGAACCU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-62399 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:38191650-38191673 | + | 368 | 0.40 | AGGACUGUUAAGGGUAUCAUGAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-63562 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:60235656-60235735 | + | 597 | 0.65 | UCGCAUGCUUGCGUGGAACCAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-64295 | Gossypium hirsutum (Upland Cotton) 1.1 | D02:65198539-65198610 | - | 210 | 0.23 | UUUAACGGUAGAAAUGGAUGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-66989 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:34476717-34476739 | - | 568 | 0.61 | UGAAGAAAAAUACUGACAGUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-67275 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:37577355-37577479 | - | 1,642 | 1.77 | GGGAAUUAUAGCUGCUGAAGACUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-67390 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:38523156-38523249 | - | 227 | 0.25 | AAGGUCAUGGUCUUUAGCGGUGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-67393 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:38568319-38568342 | - | 503 | 0.54 | GGAAUCUUGAUGAUGCUGCAU | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-67394 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:38568439-38568466 | - | 4,029 | 4.35 | GCGGCAUUAUCAAGAUUCACA | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-67920 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:42235602-42235625 | + | 521 | 0.56 | AAGCUCAGGAGGGAUAGCGCCAUC | miR390 | nearMIRNA | ShortStack |
| ghr-b1.1r1-68606 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45660846-45660934 | - | 2,287 | 2.47 | UCGGACUGGAUUUGUUGACAA | miR3476 | nearMIRNA | ShortStack |
| ghr-b1.1r1-68633 | Gossypium hirsutum (Upland Cotton) 1.1 | D03:45752691-45752799 | + | 108,814 | 117.54 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | nearMIRNA | ShortStack |
| ghr-b1.1r1-68922 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:473672-473762 | + | 4,542 | 4.91 | GCGUAUGAGGAGCCAAGCAUA | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-70123 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:8553925-8554158 | + | 522 | 0.56 | AGCGGCACUUUCUGGAAAACG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-71116 | Gossypium hirsutum (Upland Cotton) 1.1 | D04:32491557-32491580 | - | 265 | 0.29 | GCGCGGCUAAAGAUCAUGACCUUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-74073 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:6309163-6309201 | + | 901 | 0.97 | CUUGGCUAACCUGACGGCUUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-74367 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:8519193-8519215 | + | 296 | 0.32 | AGGUGCAGGUGCAGGCGCAGC | miR530 | nearMIRNA | ShortStack |
| ghr-b1.1r1-75336 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:15705963-15706071 | + | 2,125 | 2.30 | UGUUGGCUCGGUUCACUCAGA | miR171 | nearMIRNA | ShortStack |
| ghr-b1.1r1-75376 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:16024872-16024896 | + | 583 | 0.63 | AUUGAUCAGUGGUAGCUUCGGCA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-76381 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:23298267-23298290 | - | 376 | 0.41 | ACUCCACAAGAGGGCUUAAGAAAC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-76517 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:24281451-24281580 | - | 3,667 | 3.96 | UUGGCAUUCUGUCCACCUCG | miR394 | nearMIRNA | ShortStack |
| ghr-b1.1r1-77562 | Gossypium hirsutum (Upland Cotton) 1.1 | D05:31852175-31852243 | - | 37,867 | 40.90 | GCGUAUGAGGAGCCAUGCAUG | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-79801 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:318467-318520 | - | 190 | 0.21 | GAUGCUGAUGUGGUAACUCACGUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-81482 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:13127410-13127431 | + | 5,139 | 5.55 | UGACAGAAGAGAGGGAGCAC | miR156 | nearMIRNA | ShortStack |
| ghr-b1.1r1-81874 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:20243423-20243447 | - | 208 | 0.23 | AGGGAGAAGGUGAUACCACUGCA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-82871 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:53887596-53887619 | - | 1,384 | 1.50 | UGUGGAAAUCUUGCAUGGCUA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-83585 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:59943474-59943558 | - | 289 | 0.31 | UUGAAUCUAGUUUCUCUCUUUCU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-84234 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:63237841-63238075 | - | 5,499 | 5.94 | AUGGAUUGGGAAGGGGCUAUAAGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-84448 | Gossypium hirsutum (Upland Cotton) 1.1 | D06:63900221-63900243 | + | 468 | 0.51 | AACCCUUUUGACUCUCCUCGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-85130 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:2989315-2989342 | - | 521 | 0.56 | UUCCACAGCUUUCUUGAACUG | miR396 | nearMIRNA | ShortStack |
| ghr-b1.1r1-85213 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:3305996-3306077 | + | 814 | 0.88 | GCUCACUUCUCUUUCUGUCAGC | miR156 | nearMIRNA | ShortStack |
| ghr-b1.1r1-88068 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:29653326-29653488 | - | 754 | 0.81 | AGGAUUAAAGUGAAAAAAUGGUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-88121 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:30980242-30980483 | - | 326 | 0.35 | AAUGCUUGGGGCUUUAGCGGCGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-89842 | Gossypium hirsutum (Upland Cotton) 1.1 | D07:54822991-54823262 | + | 5,525 | 5.97 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | ShortStack |
| ghr-b1.1r1-90080 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:830812-830835 | + | 4,324 | 4.67 | GCGUAUGAGGAGCCAAGCAUA | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-90348 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:2018831-2018873 | - | 3,195 | 3.45 | UCAAACAAGCUGGGGAACAAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-92288 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:32073364-32073493 | - | 291 | 0.31 | GUAACGAGAAUGGAGCAAAGACA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-92768 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:45279877-45279909 | - | 64,642 | 69.83 | UCGGACCAGGCUUCAUUCCCC | miR166 | nearMIRNA | ShortStack |
| ghr-b1.1r1-92769 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:45280001-45280043 | - | 886 | 0.96 | GGAAUGUUGUCUGACCCGAGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-93465 | Gossypium hirsutum (Upland Cotton) 1.1 | D08:53794776-53794932 | - | 9,762 | 10.55 | AGGGUAGAUUUGGAUGAGCAGUGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-95464 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:1248352-1248399 | - | 374 | 0.40 | ACUGGAUUGGUUAGUAGGGUCAUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-95885 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:6286937-6286962 | - | 427 | 0.46 | UUGUGAUAUUAGUGAAAAACA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-97806 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:36048395-36048427 | + | 574 | 0.62 | UUGGUAUGGAGGAUGGAAAAG | miR8634 | nearMIRNA | ShortStack |
| ghr-b1.1r1-98751 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:42007937-42007963 | + | 477 | 0.52 | UAAUCUGCAUCCUGAGGUUUA | miR2111 | nearMIRNA | ShortStack |
| ghr-b1.1r1-99028 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:43534463-43534603 | + | 2,823 | 3.05 | CAUGUGCCCCUCUUCCCCAUC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-99941 | Gossypium hirsutum (Upland Cotton) 1.1 | D09:48472083-48472214 | + | 1,377,202 | 1,487.64 | UGAAGCUGCCAGCAUGAUCUCA | miR167 | nearMIRNA | ShortStack |
| ghr-b1.1r1-100451 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:467858-467890 | - | 988 | 1.07 | UUCCUUGACAUUGUAUCGUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-100703 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:1686516-1686536 | - | 286 | 0.31 | UUGAGUGCAGCGUUGAUGAGC | miR397 | nearMIRNA | ShortStack |
| ghr-b1.1r1-101958 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:8981809-8981890 | + | 2,727 | 2.95 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | ShortStack |
| ghr-b1.1r1-103686 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:42749896-42749917 | - | 86 | 0.09 | UAGGAUGUGUUUUUCUCUCUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-104024 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:49383548-49383578 | + | 662 | 0.72 | AGAGAAUAGAUUGUAUGAAACUGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-104328 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:53007414-53007437 | - | 206 | 0.22 | GAGCUAUUCCGUUGGCCUAAGAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-104795 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:57445966-57445989 | + | 503 | 0.54 | GCAGCAUCUUCAAGAUUCACA | miR172 | nearMIRNA | ShortStack |
| ghr-b1.1r1-104862 | Gossypium hirsutum (Upland Cotton) 1.1 | D10:57907582-57907651 | - | 5,219 | 5.64 | GCGUAUGAGGAGUCAAGCAUA | miR160 | nearMIRNA | ShortStack |
| ghr-b1.1r1-106863 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:6394243-6394281 | + | 494 | 0.53 | CAGCCAAGGAUGACUUGCCGG | miR169 | nearMIRNA | ShortStack |
| ghr-b1.1r1-108549 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:18114615-18114640 | + | 181 | 0.20 | AGGAUUAAAGUGAAAAAAUGGUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-110102 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:48317917-48317947 | + | 389 | 0.42 | UUGAAGAGGCAGUGGGUUCGCAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-110359 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:53041953-53042036 | - | 3,372 | 3.64 | UGAAGCUGCCAGCAUGAUCUA | miR167 | nearMIRNA | ShortStack |
| ghr-b1.1r1-110385 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:53307593-53307664 | + | 284 | 0.31 | AAUGCUUGGGGCUUUAGCGGCGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-110490 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:54643958-54643995 | - | 439 | 0.47 | AUUGAACGAGACCAUGGAUGAUGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-111150 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:58909763-58909813 | - | 463 | 0.50 | UUUUUGGUUUUUGCUGUUGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-111958 | Gossypium hirsutum (Upland Cotton) 1.1 | D11:65512781-65512827 | - | 538 | 0.58 | AGAAUGAUGAGAAGAGAGAGAACG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-114010 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:28415256-28415330 | + | 1,898 | 2.05 | GGUUGGUGUGCAGGGGGUGGAAUA | miR2950 | nearMIRNA | ShortStack |
| ghr-b1.1r1-114838 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:39762812-39762832 | + | 381 | 0.41 | AGUUCCUUCAAAUUCUUCAAC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-115078 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:41439370-41439390 | + | 361 | 0.39 | CACGUGCUCCCCUUCUCCAAC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-115468 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:44929345-44929549 | - | 1,609 | 1.74 | ACUUGAUUCAGACUGGUAGGCAUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-115898 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:48601843-48601869 | + | 233 | 0.25 | CGGAACAGGAAGAUUGAUGAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-116825 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:54494165-54494187 | + | 488 | 0.53 | UUCCAGAAGCAGAGUUCGGACA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-117103 | Gossypium hirsutum (Upland Cotton) 1.1 | D12:56084385-56084431 | - | 501 | 0.54 | UGGGAUGGGGAUGGGGUUUAAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-119455 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:13028420-13028446 | - | 1,272 | 1.37 | GUUCCUCUGAUCACUUCAUUG | miR395 | nearMIRNA | ShortStack |
| ghr-b1.1r1-119482 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:13503469-13503713 | + | 728 | 0.79 | AAGGUCAUGGUCUUUAGCGGUGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-120245 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:36404442-36404497 | + | 2,070 | 2.24 | AACUCCAGAAGUAGGGCUAGAAUG | miR8644 | nearMIRNA | ShortStack |
| ghr-b1.1r1-120667 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:45031613-45031887 | + | 2,945 | 3.18 | AGGGCAUGACUUUUAGCGGCGUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-122304 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:56910754-56910790 | - | 4,405 | 4.76 | GUUCAAUAAAGCUGUGGGAAG | miR396 | nearMIRNA | ShortStack |
| ghr-b1.1r1-122463 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:57999069-57999104 | - | 575 | 0.62 | AUGGAUGGAUUUUUAAACAGA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-122829 | Gossypium hirsutum (Upland Cotton) 1.1 | D13:59511102-59511223 | + | 2,271 | 2.45 | UAAUCUGACUUUUAGUAAAAGAGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-124282 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold117851:181-294 | - | 2,433 | 2.63 | ACAAGUAGGCUGAGGUUUGACAA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-124904 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold1237_A05:98149-98180 | - | 644 | 0.70 | CUUGGCUAACCUGACGGCUUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-124905 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold1237_A05:106978-107126 | - | 995 | 1.08 | UAGCCAAGAAUGACUUGCCU | miR169 | nearMIRNA | ShortStack |
| ghr-b1.1r1-125466 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold12767:455-565 | - | 437 | 0.47 | AGGACUUUUCAAGCGUAUGAUUGG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-126104 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold13846:1265-1373 | - | 6,432 | 6.95 | ACCGUGUUACUCUGUCUAAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-126269 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold143640:207-347 | - | 303 | 0.33 | UUUCGGUUAACGGUUAAUUCGGUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-126452 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold149481:159-213 | - | 494 | 0.53 | UUGGACUCCACAAGCAAGUUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-126726 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold15975:99-134 | + | 705 | 0.76 | AGUAUCGGGCUGAGUCGGAUAUAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-127071 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold171517:85-225 | - | 2,813 | 3.04 | CAUGUGCCCCUCUUCCCCAUC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-127340 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold182_A01:5285-5326 | - | 51,872 | 56.03 | UCGGACCAGGCUUCAUUCCCA | miR166 | nearMIRNA | ShortStack |
| ghr-b1.1r1-127458 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold185142:103-123 | - | 450 | 0.49 | UAAUCUGCAUCCUGAGGUUUA | miR2111 | nearMIRNA | ShortStack |
| ghr-b1.1r1-128461 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold207055:94-118 | - | 137 | 0.15 | GAUUUAAUGUGUAAUUGUAGACGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-128497 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold208_A02:77436-77562 | + | 1,002 | 1.08 | AAGAGAAUGGAUCGUAUGGAACUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-128529 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2106_A08:876767-876819 | + | 2,543 | 2.75 | UGGGUAGCAGUGGGAUUUAAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-128669 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2186_A08:2460-2492 | + | 597 | 0.65 | AGGUCCUGACCUUUGGCGGCGUUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-128926 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2270_A08:47585-47605 | + | 335 | 0.36 | UCCCGUAGGAGUUCUGUCUUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-129228 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold22908:1031-1053 | + | 299 | 0.32 | UGCCAAAGGAGAGUUGCCCUG | miR399 | nearMIRNA | ShortStack |
| ghr-b1.1r1-129369 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2300_A09:53575-53713 | + | 2,809 | 3.03 | CAUGUGCCCCUCUUCCCCAUC | miR164 | nearMIRNA | ShortStack |
| ghr-b1.1r1-129712 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold241143:150-195 | - | 507 | 0.55 | UGGGAUGGGGAUGGGGUUUAAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-129985 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2439_A09:116016-116177 | - | 4,791 | 5.18 | UUGUGAUAUUAGUGAGGAACA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-130384 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold256078:1-92 | + | 606 | 0.66 | UCGCAUGCUUGCGUGGAACCAUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-130873 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold2735_A11:93866-93884 | + | 175 | 0.19 | GUGCCAUCGGCCUGCGACAAG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-131784 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold30895:34-67 | - | 379 | 0.41 | GGAUUAACAGCUGAUCGUUGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-131813 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold31038:1129-1170 | + | 51,567 | 55.70 | UCGGACCAGGCUUCAUUCCCA | miR166 | nearMIRNA | ShortStack |
| ghr-b1.1r1-132312 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3405_A12:220900-220945 | - | 443 | 0.48 | UGGGAUGGGGAUGGGGUUUAAUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-132813 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3570_A13:2255545-2255568 | - | 219 | 0.24 | UGGGACAUGGCAUUGGCAUCCUA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-132909 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3656_A13:5012-5135 | + | 2,100 | 2.27 | AGGUCCUGACCUUUGGCGGCGUUU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-134407 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold3990_D04:43823-43856 | - | 454 | 0.49 | UUAGAUUGCAUUUUACCCCUU | miR8764 | nearMIRNA | ShortStack |
| ghr-b1.1r1-135118 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold41365:813-945 | + | 450 | 0.49 | AUAGAUCUCUGAGAUAGCAAGCAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-135142 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4157_D06:8355-8598 | + | 965 | 1.04 | AUGGACAACUUAGAUUUGACGUGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-135730 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4253_D08:23280-23313 | + | 2,318 | 2.50 | UUGGUAUGGAGGAUGGAAAAG | miR8634 | nearMIRNA | ShortStack |
| ghr-b1.1r1-135960 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4315_D08:165130-165240 | - | 436 | 0.47 | AAUGAUCGAAUUGAUAGAACGUGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-137513 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4615_D12:385421-385444 | - | 114 | 0.12 | AUUAUUGGGAAUUCAACACGUUGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-138466 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4862:32569-32651 | - | 743 | 0.80 | UGCGGGUUUUGGUCGGCUUUC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-138760 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold4964:3181-3320 | + | 1,045 | 1.13 | AUCGGUAAGUUAGAGUAGGACGGC | | nearMIRNA | ShortStack |
| ghr-b1.1r1-138992 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold50339:602-770 | + | 1,040 | 1.12 | UUAAAGUAGAAAUAUAAGAAA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-140428 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold6254:6366-6452 | - | 1,616 | 1.75 | CAAGGCUUCUUAGGACUUAUCUA | | nearMIRNA | ShortStack |
| ghr-b1.1r1-140708 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold66573:268-412 | + | 431 | 0.47 | AUUAGACGGUGUGUAGGGAUUAAU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-141507 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold7645:71-124 | + | 416 | 0.45 | CAAUCGGAUGUAGGGCUGGUG | | nearMIRNA | ShortStack |
| ghr-b1.1r1-141701 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold8028:641-665 | - | 269 | 0.29 | AAUCCAUUAAUGAAUUGCUGACGU | | nearMIRNA | ShortStack |
| ghr-b1.1r1-142268 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold94381:315-422 | + | 108,733 | 117.45 | ACUUUUGAACUGGAUUUGCCGA | miR2949 | nearMIRNA | ShortStack |
| ghr-b1.1r1-142287 | Gossypium hirsutum (Upland Cotton) 1.1 | scaffold94877:202-366 | - | 1,377,787 | 1,488.27 | UGAAGCUGCCAGCAUGAUCUCA | miR167 | nearMIRNA | ShortStack |
Data from Lunardon et al. (2020)