het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
stu-b4.04r1-2716Solanum tuberosum (Potato) 4.04chr00:7244469-7244590-14,49823.45CGGAAUCAAGAGCUCCAAGUGGGsiRNA23ShortStack
stu-b4.04r1-4444Solanum tuberosum (Potato) 4.04chr00:38289819-38289964-8681.40UCUGGGAUUUCGGGCAUAGGCUAsiRNA23ShortStack
stu-b4.04r1-4457Solanum tuberosum (Potato) 4.04chr00:38513718-38513751+3910.63UUAGAUUUUUGACGGCUGUUUACsiRNA23ShortStack
stu-b4.04r1-4938Solanum tuberosum (Potato) 4.04chr00:44776695-44776816-1,9243.11UACCUGGUUGAUCCUGCCAGUAGsiRNA23ShortStack
stu-b4.04r1-5395Solanum tuberosum (Potato) 4.04chr01:1850590-1850702-7711.25GUGGUUAAUGAGAUGGGUGGACAsiRNA23ShortStack
stu-b4.04r1-5938Solanum tuberosum (Potato) 4.04chr01:5350125-5350299.1,1411.85ACAAGAUAGUGUCACGUAGGCCAsiRNA23ShortStack
stu-b4.04r1-7677Solanum tuberosum (Potato) 4.04chr01:46887639-46887663+4320.70GUUAAGACUCUAGAAAGAAGAUAsiRNA23ShortStack
stu-b4.04r1-13404Solanum tuberosum (Potato) 4.04chr02:5345003-5345029-6090.99AACACUAACAUCAAUCUCCCCAGsiRNA23ShortStack
stu-b4.04r1-14534Solanum tuberosum (Potato) 4.04chr02:21895502-21895591+4910.79UGAGAACAAGUUAUUCUGAAAUUsiRNA23ShortStack
stu-b4.04r1-15125Solanum tuberosum (Potato) 4.04chr02:25714073-25714117+8721.41UCAAUCUUGUUGAGUCGGCCCUAsiRNA23ShortStack
stu-b4.04r1-15565Solanum tuberosum (Potato) 4.04chr02:27890939-27890985+6140.99AUAUGGACAAGUAAAUAGGGACAsiRNA23ShortStack
stu-b4.04r1-18107Solanum tuberosum (Potato) 4.04chr02:43195847-43195925+4040.65UAAGUGAAUUAUGCGGACAACUAsiRNA23ShortStack
stu-b4.04r1-19908Solanum tuberosum (Potato) 4.04chr03:4259387-4259456.4010.65AGGAGGUCAUUCUUUGUGAAACAsiRNA23ShortStack
stu-b4.04r1-20067Solanum tuberosum (Potato) 4.04chr03:5549107-5549144-7841.27AGAGGAUGUUAGACAAGAGGUCAsiRNA23ShortStack
stu-b4.04r1-21149Solanum tuberosum (Potato) 4.04chr03:20068882-20068906-2180.35AGUACAUCAUAUAAAAUGGGACAsiRNA23ShortStack
stu-b4.04r1-21364Solanum tuberosum (Potato) 4.04chr03:27164868-27165004+50,76282.12UUCGUUCCCCGGCAGCGGCGCCAsiRNA23ShortStack
stu-b4.04r1-21929Solanum tuberosum (Potato) 4.04chr03:35709970-35710122+1,7852.89UAAGUGAAUUAUGCGGACAACUAsiRNA23ShortStack
stu-b4.04r1-22652Solanum tuberosum (Potato) 4.04chr03:41494730-41494754-2200.36AAGUACUGAAGGUUCUCCUGCAGsiRNA23ShortStack
stu-b4.04r1-23831Solanum tuberosum (Potato) 4.04chr03:48320358-48320405+34,31355.51UGAAGAUAAAGUGCCUGCUCUGAsiRNA23ShortStack
stu-b4.04r1-23852Solanum tuberosum (Potato) 4.04chr03:48419320-48419353+4580.74UUAGAUUUUUGACGGCUGUUUACsiRNA23ShortStack
stu-b4.04r1-23912Solanum tuberosum (Potato) 4.04chr03:48831917-48831960+5260.85UGUGUCGGAGCUCAGGACGGCUUsiRNA23ShortStack
stu-b4.04r1-26671Solanum tuberosum (Potato) 4.04chr04:2107905-2108056-8381.36GACGAGAGGGAGUUGCUCGGAUAsiRNA23ShortStack
stu-b4.04r1-26743Solanum tuberosum (Potato) 4.04chr04:2795515-2795650+1,8613.01AGGAGGGCAACUUUAGAAGGCUAsiRNA23ShortStack
stu-b4.04r1-27284Solanum tuberosum (Potato) 4.04chr04:6945357-6945396-3850.62UCUAGGAUUUCAAGAAAGCGGGUsiRNA23ShortStack
stu-b4.04r1-29305Solanum tuberosum (Potato) 4.04chr04:49501913-49501974+4980.81UCGGAUCCGAAUAUUUUAGGCUUsiRNA23ShortStack
stu-b4.04r1-31072Solanum tuberosum (Potato) 4.04chr04:62777280-62777393.5900.95UUUGAGCUAGCUUUUGGGGUGUAsiRNA23ShortStack
stu-b4.04r1-31295Solanum tuberosum (Potato) 4.04chr04:64118927-64118987-9521.54CCAAUCUUGUUGAGUCGGCCCUAsiRNA23ShortStack
stu-b4.04r1-31511Solanum tuberosum (Potato) 4.04chr04:65549886-65550188-1,5422.49GAAGGACUACUGCUGGACCGGUAsiRNA23ShortStack
stu-b4.04r1-31763Solanum tuberosum (Potato) 4.04chr04:66731995-66732124-5180.84GAAGGACUACUGCUGGACCGGUAsiRNA23ShortStack
stu-b4.04r1-32190Solanum tuberosum (Potato) 4.04chr04:68836708-68836890+1,4482.34AUAUGGACAAGUAAAUAGGGACAsiRNA23ShortStack
stu-b4.04r1-33082Solanum tuberosum (Potato) 4.04chr05:531695-531839+5140.83UCACGGAUUGGUUUGGAUCGGUUsiRNA23ShortStack
stu-b4.04r1-35170Solanum tuberosum (Potato) 4.04chr05:14132000-14132043+5850.95UGGAUGAUUGUAUAUAUGUAAGUsiRNA23ShortStack
stu-b4.04r1-36174Solanum tuberosum (Potato) 4.04chr05:38053419-38053442+2590.42AGAGGAAAAAAAUACGUAGAAGAsiRNA23ShortStack
stu-b4.04r1-36512Solanum tuberosum (Potato) 4.04chr05:44237558-44237582.5120.83UGCGAGUCAGUUUGGAUUGGCUUsiRNA23ShortStack
stu-b4.04r1-38941Solanum tuberosum (Potato) 4.04chr06:11280197-11280304+5110.83UAUCUCGUGGAGGUAGAGAGGCUsiRNA23ShortStack
stu-b4.04r1-39331Solanum tuberosum (Potato) 4.04chr06:25123805-25124078-2,8184.56AGGAGGGCAACUUUAGAAGGCUAsiRNA23ShortStack
stu-b4.04r1-39484Solanum tuberosum (Potato) 4.04chr06:27832277-27832347+2380.39AAACGGAGACAGACCAAUUUUGGsiRNA23ShortStack
stu-b4.04r1-39620Solanum tuberosum (Potato) 4.04chr06:30235435-30235552-2810.46UUUCCAUAAUUUGUAGAAACAUAsiRNA23ShortStack
stu-b4.04r1-40033Solanum tuberosum (Potato) 4.04chr06:34942427-34942646-9061.47UGGGAACAAGUUAUCUCGGGAUUsiRNA23ShortStack
stu-b4.04r1-40035Solanum tuberosum (Potato) 4.04chr06:34943800-34943850+6441.04UAAGGUUAUUGCAUGCUCAUUUUsiRNA23ShortStack
stu-b4.04r1-40687Solanum tuberosum (Potato) 4.04chr06:40125982-40126006.3510.57ACAGUUCGGUGCACUAAGCUCUCsiRNA23ShortStack
stu-b4.04r1-42209Solanum tuberosum (Potato) 4.04chr06:49936435-49936913-3,6355.88AGAGAGAAAGGCACAAGAGAACUsiRNA23ShortStack
stu-b4.04r1-44242Solanum tuberosum (Potato) 4.04chr07:802987-803033+1,0061.63UUGAAGGUUUGUUUGGACAUGCAsiRNA23ShortStack
stu-b4.04r1-44576Solanum tuberosum (Potato) 4.04chr07:2475088-2475175-6321.02AAGACUAUUCUGCUCGAACGGUAsiRNA23ShortStack
stu-b4.04r1-45298Solanum tuberosum (Potato) 4.04chr07:7354578-7354610-5890.95CUACAACCCCCCCGAGCUAGGCUsiRNA23ShortStack
stu-b4.04r1-46050Solanum tuberosum (Potato) 4.04chr07:26721932-26722103+1,3672.21UCACGGGUUGAUUUGGAUCGGUUsiRNA23ShortStack
stu-b4.04r1-47005Solanum tuberosum (Potato) 4.04chr07:43156132-43156526.1,7712.87CCUUUGUGGACGUAGGUCGAUUAsiRNA23ShortStack
stu-b4.04r1-48653Solanum tuberosum (Potato) 4.04chr07:52110383-52110413-4060.66AUGGUUGAUGUUAGUGACUAGUUsiRNA23ShortStack
stu-b4.04r1-48869Solanum tuberosum (Potato) 4.04chr07:53106287-53106331.3700.60CACAAGUUGGAUCUAGAGAGGGUsiRNA23ShortStack
stu-b4.04r1-51311Solanum tuberosum (Potato) 4.04chr08:21883393-21883422-1190.19AGAGAGAUUGUUUCUGAUAGACAsiRNA23ShortStack
stu-b4.04r1-51957Solanum tuberosum (Potato) 4.04chr08:36358734-36358903.3750.61AGUUUUGUUCUGUGGGUGGCACAsiRNA23ShortStack
stu-b4.04r1-54271Solanum tuberosum (Potato) 4.04chr08:53226732-53226985.1,5822.56UGUGUCCGAUAUGGAGAGCGGUUsiRNA23ShortStack
stu-b4.04r1-56227Solanum tuberosum (Potato) 4.04chr09:6378527-6378585-4380.71UCUCACAAGUAGGAUCUGGGGAGsiRNA23ShortStack
stu-b4.04r1-56838Solanum tuberosum (Potato) 4.04chr09:12500105-12500139+4420.72GACGGUAAAUAACAAGAUGGACAsiRNA23ShortStack
stu-b4.04r1-57122Solanum tuberosum (Potato) 4.04chr09:19212839-19212887-3030.49UAAGUGAAUUAUGCGGACAACUAsiRNA23ShortStack
stu-b4.04r1-57142Solanum tuberosum (Potato) 4.04chr09:19500869-19501045.4550.74ACAAGGUAGGAUAAAGCUGCAUAsiRNA23ShortStack
stu-b4.04r1-57821Solanum tuberosum (Potato) 4.04chr09:43021097-43021194-5040.82AGUUGUAACACACCUUGAAGCUCsiRNA23ShortStack
stu-b4.04r1-61233Solanum tuberosum (Potato) 4.04chr10:1937059-1937210-6621.07CACAAGUGGGGUCUGAGAAGGGUsiRNA23ShortStack
stu-b4.04r1-61719Solanum tuberosum (Potato) 4.04chr10:4644826-4644850+4470.72AUAGUCGAGAUGCAUACAAGCUAsiRNA23ShortStack
stu-b4.04r1-65066Solanum tuberosum (Potato) 4.04chr10:53370233-53370354+1,1541.87CAAGCUCGAAUCAAUGAACGGUUsiRNA23ShortStack
stu-b4.04r1-65112Solanum tuberosum (Potato) 4.04chr10:53576030-53576261+3,5215.70CCAAUGUUGUUGAGUCGGCCCUAsiRNA23ShortStack
stu-b4.04r1-65422Solanum tuberosum (Potato) 4.04chr10:54942022-54942081-4070.66UAGGACGCACACAAAGUUAAGGUsiRNA23ShortStack
stu-b4.04r1-65754Solanum tuberosum (Potato) 4.04chr10:56201125-56201581.1,0941.77UCUGAGAUUUCGGGCAUAGGUUAsiRNA23ShortStack
stu-b4.04r1-66340Solanum tuberosum (Potato) 4.04chr10:58675687-58675723-5030.81AAGACUGUGUAUACACCACCCUCsiRNA23ShortStack
stu-b4.04r1-66697Solanum tuberosum (Potato) 4.04chr11:835096-835135-4040.65ACGAGACAUAGUAGGGACGAGUUsiRNA23ShortStack
stu-b4.04r1-69263Solanum tuberosum (Potato) 4.04chr11:20784113-20784256+6231.01UCAGAGAUUUUGGGCAUAGGCUAsiRNA23ShortStack
stu-b4.04r1-69506Solanum tuberosum (Potato) 4.04chr11:29917478-29917748+6881.11CUGGGUUUGUAGCAGUUAGAGGUsiRNA23ShortStack
stu-b4.04r1-70211Solanum tuberosum (Potato) 4.04chr11:37727334-37727457+5790.94AUGUACGAUUCUGUAGAGUGGCAsiRNA23ShortStack
stu-b4.04r1-73491Solanum tuberosum (Potato) 4.04chr12:12780349-12780470-3980.64AGUACGGUCCGUAGGUAAGGCUCsiRNA23ShortStack
stu-b4.04r1-73765Solanum tuberosum (Potato) 4.04chr12:21545534-21545566-5860.95CUACAACCCCCCCGAGCUAGGCUsiRNA23ShortStack
stu-b4.04r1-75137Solanum tuberosum (Potato) 4.04chr12:52998914-52999080.3,3585.43GAAGGAAGAGAGGGAAAAUGGAGsiRNA23ShortStack
stu-b4.04r1-75285Solanum tuberosum (Potato) 4.04chr12:53823455-53823642-13,61122.02AGUGAAUGAUGCGGUAGACUGACsiRNA23ShortStack
stu-b4.04r1-75827Solanum tuberosum (Potato) 4.04chr12:56622775-56622822-4500.73UCAAGCCUUGGUAGACAGAGUUAsiRNA23ShortStack
stu-b4.04r1-76358Solanum tuberosum (Potato) 4.04chr12:59100010-59100214+7271.18GUGGUUAAUGAGAUGGGUGGACAsiRNA23ShortStack
stu-b4.04r1-188Solanum tuberosum (Potato) 4.04ChrUn:5658090-5658142-3370.55UCAGAGAUUUUGGGCAUAGGCUAsiRNA23ShortStack
stu-b4.04r1-251Solanum tuberosum (Potato) 4.04ChrUn:8183110-8183326-5040.82GUUAAGACUCUAGAAAGAAGAUAsiRNA23ShortStack
stu-b4.04r1-846Solanum tuberosum (Potato) 4.04ChrUn:36580899-36580992-1,1751.90UCGGAUCCGAAUAUUUUAGGCUUsiRNA23ShortStack
stu-b4.04r1-2284Solanum tuberosum (Potato) 4.04ChrUn:98603882-98604003-2,2993.72AGUUGGUGGAUUAGUUGUUGGAAsiRNA23ShortStack