het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Solanum tuberosum (Potato) genome build 4.04 (stu-b4.04)

Version v4.04 of Solanum tuberosum cv. DM1-3 516 R44 from Spud DB

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
stu-b4.04r1-3890Solanum tuberosum (Potato) 4.04chr00:30252653-30252948-1,9643.18AGUUGAAGAUGUAUAAGAGAUUMIRNAShortStack
stu-b4.04r1-3892Solanum tuberosum (Potato) 4.04chr00:30266744-30266927-1,3072.11AGGUGAAGGUGUUAAUGAGACUGAMIRNAShortStack
stu-b4.04r1-5360Solanum tuberosum (Potato) 4.04chr01:1692438-1692564+1,7542.84AAUAAAAAGAAGCCUCACACAACUmiR8011MIRNAShortStack
stu-b4.04r1-6018Solanum tuberosum (Potato) 4.04chr01:6085428-6085620-1,1681.89AAUUGAAGACGUAGAUGUAAUUUAMIRNAShortStack
stu-b4.04r1-9672Solanum tuberosum (Potato) 4.04chr01:68172924-68173202-97,623157.92UUUUAGCAAGAGUUGUUUUCCCmiR6024MIRNAShortStack
stu-b4.04r1-10597Solanum tuberosum (Potato) 4.04chr01:73256168-73256464+4,2076.81ACUCUCCCUCAAAGGCUUCUGmiR477MIRNAShortStack
stu-b4.04r1-10746Solanum tuberosum (Potato) 4.04chr01:73926848-73927011+699,8071,132.05UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
stu-b4.04r1-11425Solanum tuberosum (Potato) 4.04chr01:77566237-77566502+28,34345.85UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
stu-b4.04r1-11603Solanum tuberosum (Potato) 4.04chr01:78279561-78279682+2,3683.83UUCCAAAGCUGCAGAAAUGAGmiR8033MIRNAShortStack
stu-b4.04r1-11701Solanum tuberosum (Potato) 4.04chr01:78858639-78858722-4,3977.11ACAGGGACGAGGCAGCGCAUGmiR408MIRNAShortStack
stu-b4.04r1-11709Solanum tuberosum (Potato) 4.04chr01:78900422-78900561-68,928111.50ACGGGGACGAGACAGAGCAUGmiR408MIRNAShortStack
stu-b4.04r1-12957Solanum tuberosum (Potato) 4.04chr01:86913689-86913770+2,4814.01CAAUGCAACAUACUCAUCACCmiR5304MIRNAShortStack
stu-b4.04r1-13841Solanum tuberosum (Potato) 4.04chr02:14558222-14558477+1,1241.82UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
stu-b4.04r1-14267Solanum tuberosum (Potato) 4.04chr02:19595512-19595589-36,32958.77UAUUGGCCUGGUUCACUCAGAmiR171MIRNAShortStack
stu-b4.04r1-14481Solanum tuberosum (Potato) 4.04chr02:21607458-21607680+4,9057.94AUGGAGAACGGAGAAAUGGAGMIRNAShortStack
stu-b4.04r1-16980Solanum tuberosum (Potato) 4.04chr02:36391616-36391710-9,56515.47AUAUUGGUGCGGUUCAAUUAGmiR171MIRNAShortStack
stu-b4.04r1-17364Solanum tuberosum (Potato) 4.04chr02:38934725-38934923-2,3233.76UAUUGGCCUGGUUCACUCAGAmiR171MIRNAShortStack
stu-b4.04r1-17836Solanum tuberosum (Potato) 4.04chr02:41595981-41596117+85,371138.10UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
stu-b4.04r1-18401Solanum tuberosum (Potato) 4.04chr02:44703262-44703369+4460.72UUGGAAGAAAAUAUAAGUUAGMIRNAShortStack
stu-b4.04r1-18764Solanum tuberosum (Potato) 4.04chr02:46514221-46514404-6,75010.92UGUCGCUGGAGAGAUGGCACUUMIRNAShortStack
stu-b4.04r1-19330Solanum tuberosum (Potato) 4.04chr03:1216002-1216087+1,2402.01UGCCAAAGAAGAUUUGCCCCGmiR399MIRNAShortStack
stu-b4.04r1-19336Solanum tuberosum (Potato) 4.04chr03:1248580-1248687-1,4772.39AGGCUAUUCUCCUUUGGCAAGMIRNAShortStack
stu-b4.04r1-19404Solanum tuberosum (Potato) 4.04chr03:1851370-1851560-10,05216.26UGGCGAAUUGGGGGAUGUGUUMIRNAShortStack
stu-b4.04r1-21090Solanum tuberosum (Potato) 4.04chr03:18035723-18035986-5,2128.43UUUGACAAUGCACAUCUAGACACUmiR7992MIRNAShortStack
stu-b4.04r1-21636Solanum tuberosum (Potato) 4.04chr03:32830155-32830310-5,4338.79UUUGGACAUCGAGUUAGUUUGGGCMIRNAShortStack
stu-b4.04r1-21690Solanum tuberosum (Potato) 4.04chr03:33389238-33389336-7861.27AAAGUUUUGUCCAUUGGAUUUUMIRNAShortStack
stu-b4.04r1-22036Solanum tuberosum (Potato) 4.04chr03:36424831-36425128-15,70325.40UUGGACUGAAGGGAGCUCCUUmiR319MIRNAShortStack
stu-b4.04r1-22289Solanum tuberosum (Potato) 4.04chr03:38471797-38471912-151,187244.57CAAAGGAGUGUGCCUAAGAACAMIRNAShortStack
stu-b4.04r1-22686Solanum tuberosum (Potato) 4.04chr03:41790584-41790691+1,3232.14CGCCAAAGGAGAGCUGCCCUAmiR399MIRNAShortStack
stu-b4.04r1-22899Solanum tuberosum (Potato) 4.04chr03:43098054-43098182-12,96220.97AUCAUGCGAUCUCUUCGGAAUmiR393MIRNAShortStack
stu-b4.04r1-23428Solanum tuberosum (Potato) 4.04chr03:46089434-46089686+1,222,9491,978.32UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
stu-b4.04r1-24151Solanum tuberosum (Potato) 4.04chr03:50446856-50447046-37,44160.57UGUUGGAAUGGCUCAAUCAAAmiR171MIRNAShortStack
stu-b4.04r1-24907Solanum tuberosum (Potato) 4.04chr03:54527572-54527796+168,214272.11UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
stu-b4.04r1-25429Solanum tuberosum (Potato) 4.04chr03:57753197-57753274-1,6002.59UGAACUCUCUCCCUCAAUGGCUmiR1446MIRNAShortStack
stu-b4.04r1-25573Solanum tuberosum (Potato) 4.04chr03:58493860-58494056+418,507677.00UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
stu-b4.04r1-25601Solanum tuberosum (Potato) 4.04chr03:58600688-58600944+1,7242.79UUGGACUGAAGGGUUCCCUUCmiR319MIRNAShortStack
stu-b4.04r1-26710Solanum tuberosum (Potato) 4.04chr04:2548503-2548715-5,3778.70GAUAGUGCAGGUAGGAAACUCACAMIRNAShortStack
stu-b4.04r1-30352Solanum tuberosum (Potato) 4.04chr04:58538400-58538565+1,508,9332,440.94UGUGGGUGGGGUGGAAAGAUUmiR482MIRNAShortStack
stu-b4.04r1-30356Solanum tuberosum (Potato) 4.04chr04:58545422-58545638+239,529387.48GGAGGAAUCGAAAGAUAUAAGmiR8036MIRNAShortStack
stu-b4.04r1-31297Solanum tuberosum (Potato) 4.04chr04:64127649-64127875-14,01722.68UUGGUUUGGUGUAAACACUCGGUGMIRNAShortStack
stu-b4.04r1-33042Solanum tuberosum (Potato) 4.04chr05:308741-308840-3,4795.63UGUGUUCCCAGGUCACCCCUUmiR398MIRNAShortStack
stu-b4.04r1-34247Solanum tuberosum (Potato) 4.04chr05:7011559-7011668-2860.46AAAGUGACAUUGGGAUGGAGAmiR8035MIRNAShortStack
stu-b4.04r1-37215Solanum tuberosum (Potato) 4.04chr05:48318135-48318336+2,9214.73GGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
stu-b4.04r1-37559Solanum tuberosum (Potato) 4.04chr05:50440830-50440971-5980.97AGAACUCGAGCAGAAAAUGGUMIRNAShortStack
stu-b4.04r1-37587Solanum tuberosum (Potato) 4.04chr05:50551491-50551714+2,3733.84UAUCUAGGUGUGCAUACUCAAMIRNAShortStack
stu-b4.04r1-37720Solanum tuberosum (Potato) 4.04chr05:51289964-51290205+119,939194.02AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
stu-b4.04r1-37779Solanum tuberosum (Potato) 4.04chr05:51565123-51565291-32,97053.33GCGUAUGAGGAGCCAAGCAUAmiR160MIRNAShortStack
stu-b4.04r1-38068Solanum tuberosum (Potato) 4.04chr06:1291261-1291427+955,3721,545.47UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
stu-b4.04r1-38249Solanum tuberosum (Potato) 4.04chr06:2696205-2696461-93,261150.87UUGGACUGAAGGGAGCUCCCUmiR319MIRNAShortStack
stu-b4.04r1-40073Solanum tuberosum (Potato) 4.04chr06:35200328-35200445-1,1401.84AGAUGGACAUGCUAAUGAACAmiR8048MIRNAShortStack
stu-b4.04r1-40650Solanum tuberosum (Potato) 4.04chr06:39907991-39908182+1,679,0412,716.12UCGGACCAGGCUUCAUUCCUCmiR166MIRNAShortStack
stu-b4.04r1-40853Solanum tuberosum (Potato) 4.04chr06:41031926-41032086-110,157178.20UUACCGAUUCCCCCCAUUCCAAmiR482MIRNAShortStack
stu-b4.04r1-40856Solanum tuberosum (Potato) 4.04chr06:41036411-41036631-487,278788.25AGUGGGUGGUGUGGUAAGAUUmiR482MIRNAShortStack
stu-b4.04r1-41892Solanum tuberosum (Potato) 4.04chr06:48394842-48394942-1,4242.30UGGAGAAGCAGGGCACAUGCUmiR164MIRNAShortStack
stu-b4.04r1-42226Solanum tuberosum (Potato) 4.04chr06:49995196-49995364+7,96212.88UUUGGAACGAACAGAGAAAGAMIRNAShortStack
stu-b4.04r1-42363Solanum tuberosum (Potato) 4.04chr06:50754576-50754843-3,198,6415,174.32UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
stu-b4.04r1-42410Solanum tuberosum (Potato) 4.04chr06:51059964-51060127+23,87638.62UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
stu-b4.04r1-42530Solanum tuberosum (Potato) 4.04chr06:51587873-51588075-13,12021.22ACUCAAAACGGCGUUUGUAAUGMIRNAShortStack
stu-b4.04r1-42797Solanum tuberosum (Potato) 4.04chr06:52877581-52877738+2,8724.65UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
stu-b4.04r1-42906Solanum tuberosum (Potato) 4.04chr06:53301493-53301631-8931.45UGAUAGCCAAGGAUGACUGGCmiR169MIRNAShortStack
stu-b4.04r1-43111Solanum tuberosum (Potato) 4.04chr06:54403868-54403969-1,8713.03ACAAAGUCGCUCUAGAUGGUCMIRNAShortStack
stu-b4.04r1-43371Solanum tuberosum (Potato) 4.04chr06:55560140-55560332+22,13835.81AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
stu-b4.04r1-44021Solanum tuberosum (Potato) 4.04chr06:58906297-58906527-101,800164.68UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
stu-b4.04r1-44162Solanum tuberosum (Potato) 4.04chr07:440622-440882-99,290160.62AUAGGCUCUGAUACCAUGUAGGAAMIRNAShortStack
stu-b4.04r1-44214Solanum tuberosum (Potato) 4.04chr07:620167-620407+1,200,9411,942.72UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-44739Solanum tuberosum (Potato) 4.04chr07:3407417-3407669+1,1601.88UAGCCAAGGAUGACUUGCCUGmiR169MIRNAShortStack
stu-b4.04r1-44742Solanum tuberosum (Potato) 4.04chr07:3423121-3423255+5720.93UAGCCAAGGAUGACUUGCCUGmiR169MIRNAShortStack
stu-b4.04r1-44896Solanum tuberosum (Potato) 4.04chr07:4137103-4137292-338,557547.67UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
stu-b4.04r1-45255Solanum tuberosum (Potato) 4.04chr07:6977480-6977619-5,1668.36CAGCCAGGGAUGACUUGCCGAmiR169MIRNAShortStack
stu-b4.04r1-45281Solanum tuberosum (Potato) 4.04chr07:7161459-7161554-1,6502.67CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
stu-b4.04r1-46306Solanum tuberosum (Potato) 4.04chr07:36857614-36857733+30,47349.30UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-47579Solanum tuberosum (Potato) 4.04chr07:46855652-46855859+23,76938.45UUGAGCCGCGUCAAUAUCUCUmiR171MIRNAShortStack
stu-b4.04r1-47588Solanum tuberosum (Potato) 4.04chr07:46899718-46899940+94,308152.56AGAUGUUGGUGCGGUUCAAUGmiR171MIRNAShortStack
stu-b4.04r1-48221Solanum tuberosum (Potato) 4.04chr07:50005200-50005263+4280.69UCUUUUCACAGACAUGAAUCCMIRNAShortStack
stu-b4.04r1-48990Solanum tuberosum (Potato) 4.04chr07:53759733-53759873-51,68883.61UCAUUGAGUGCAGCGUUGAUGmiR397MIRNAShortStack
stu-b4.04r1-50138Solanum tuberosum (Potato) 4.04chr08:3248089-3248303-1,449,5142,344.82UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
stu-b4.04r1-50253Solanum tuberosum (Potato) 4.04chr08:3981209-3981367+9541.54UACAUGAAUUAUCACCAACUAMIRNAShortStack
stu-b4.04r1-50489Solanum tuberosum (Potato) 4.04chr08:5587743-5587925-44,95672.72UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
stu-b4.04r1-51807Solanum tuberosum (Potato) 4.04chr08:35010914-35011011-5220.84UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-51818Solanum tuberosum (Potato) 4.04chr08:35042636-35042726-37,09460.01UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-51819Solanum tuberosum (Potato) 4.04chr08:35043171-35043270-1,8312.96UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-51832Solanum tuberosum (Potato) 4.04chr08:35213820-35213912+9641.56UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-52486Solanum tuberosum (Potato) 4.04chr08:41314553-41314701+201,534326.01UGUCGCAGAUGACUUUCGCCCmiR1919MIRNAShortStack
stu-b4.04r1-52492Solanum tuberosum (Potato) 4.04chr08:41408625-41408761+76,935124.46UGUCGCAGAUGACUUUCGCCCmiR1919MIRNAShortStack
stu-b4.04r1-52764Solanum tuberosum (Potato) 4.04chr08:43858531-43858745+15,95525.81UGGCAAGCAUCUUUGGCGACUmiR169MIRNAShortStack
stu-b4.04r1-54256Solanum tuberosum (Potato) 4.04chr08:53167894-53168037-3,2665.28AAUGUUGAUGCAAGUGAUGCMIRNAShortStack
stu-b4.04r1-55044Solanum tuberosum (Potato) 4.04chr08:56641431-56641602+567,169917.49UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
stu-b4.04r1-55367Solanum tuberosum (Potato) 4.04chr09:1217837-1218115+1,6202.62UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
stu-b4.04r1-55934Solanum tuberosum (Potato) 4.04chr09:4720263-4720349-7,79512.61AAAAGUUCAGGAUGAAGCACGMIRNAShortStack
stu-b4.04r1-56014Solanum tuberosum (Potato) 4.04chr09:5149773-5149973-58,47394.59AGGUGUUGAUGCUCAUGCAGAmiR530MIRNAShortStack
stu-b4.04r1-56728Solanum tuberosum (Potato) 4.04chr09:10856133-10856265+19,79732.03AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
stu-b4.04r1-57507Solanum tuberosum (Potato) 4.04chr09:31202204-31202355+1,0961.77AUUUUUGAAUGGAAGGCCCAUGUGmiR8016MIRNAShortStack
stu-b4.04r1-58595Solanum tuberosum (Potato) 4.04chr09:48570892-48570999+152,770247.13UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
stu-b4.04r1-58598Solanum tuberosum (Potato) 4.04chr09:48580399-48580566+269,164435.42UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
stu-b4.04r1-59578Solanum tuberosum (Potato) 4.04chr09:54231252-54231484+1,1651.89UUAUUUUCACCUGACAAGACUMIRNAShortStack
stu-b4.04r1-59649Solanum tuberosum (Potato) 4.04chr09:54561662-54561812+102,462165.75UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
stu-b4.04r1-60217Solanum tuberosum (Potato) 4.04chr09:57347455-57347566-1,1321.83AAGUAGGAAUCAAGGUCAAUGmiR8050MIRNAShortStack
stu-b4.04r1-61847Solanum tuberosum (Potato) 4.04chr10:5220510-5220681-37,73561.04AGAUACUCAUUUGGGCAAGAAGMIRNAShortStack
stu-b4.04r1-61911Solanum tuberosum (Potato) 4.04chr10:5598762-5598961-4,3687.07AGUUCUUGUAGGGUGAGACAACmiR477MIRNAShortStack
stu-b4.04r1-64725Solanum tuberosum (Potato) 4.04chr10:51197203-51197492-6,1029.87AGGUAUCAGAAGUAACCCUAAACUMIRNAShortStack
stu-b4.04r1-64726Solanum tuberosum (Potato) 4.04chr10:51198533-51198714-3,5535.75AUUAUAUAUUGAGUACUAGGGCUUMIRNAShortStack
stu-b4.04r1-65460Solanum tuberosum (Potato) 4.04chr10:55048480-55048652-18,79930.41UGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
stu-b4.04r1-66975Solanum tuberosum (Potato) 4.04chr11:2019386-2019535-398,424644.52UUGCAACACACCUGAAUCGUCmiR6149MIRNAShortStack
stu-b4.04r1-66976Solanum tuberosum (Potato) 4.04chr11:2019859-2020086-44,09571.33UUCGAUACGCACCUGAAUCGAMIRNAShortStack
stu-b4.04r1-67957Solanum tuberosum (Potato) 4.04chr11:6515558-6515660+3640.59UGGAGUUACAAGUUGAGGAUCMIRNAShortStack
stu-b4.04r1-68778Solanum tuberosum (Potato) 4.04chr11:12823172-12823377-11,96219.35UUGCACUGGGUGCAACUGUAAGMIRNAShortStack
stu-b4.04r1-68832Solanum tuberosum (Potato) 4.04chr11:13569024-13569154+62,378100.91ACAGCGUUUCUCUGUAUAACCmiR7122MIRNAShortStack
stu-b4.04r1-70023Solanum tuberosum (Potato) 4.04chr11:35794054-35794140+4620.75UUUGCCAUGUCUGGAAUCAUCMIRNAShortStack
stu-b4.04r1-70053Solanum tuberosum (Potato) 4.04chr11:35976556-35976818-25,06040.54UAUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
stu-b4.04r1-70054Solanum tuberosum (Potato) 4.04chr11:35985463-35985593-7,92612.82UAUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
stu-b4.04r1-70254Solanum tuberosum (Potato) 4.04chr11:38028336-38028424-1,5232.46AAUAGACACUGUUCUGGAGUUMIRNAShortStack
stu-b4.04r1-70391Solanum tuberosum (Potato) 4.04chr11:38928062-38928301+6,50410.52UUUCAAAUAUGGUUGGAGAUGmiR8044MIRNAShortStack
stu-b4.04r1-70471Solanum tuberosum (Potato) 4.04chr11:39258162-39258242-5150.83UAGUUCAGUAUGAAACUCGAAMIRNAShortStack
stu-b4.04r1-71836Solanum tuberosum (Potato) 4.04chr12:1091464-1091688+34,16255.26CUUGGAACCACAGUUACCACCmiR10539MIRNAShortStack
stu-b4.04r1-72072Solanum tuberosum (Potato) 4.04chr12:2221739-2221872+80,255129.83CUGACAGAAGAGAGUGAGCAmiR156MIRNAShortStack
stu-b4.04r1-72169Solanum tuberosum (Potato) 4.04chr12:2734536-2734648+200,093323.68GUUCAAUAAAGCUGUGGGAAGmiR396MIRNAShortStack
stu-b4.04r1-72177Solanum tuberosum (Potato) 4.04chr12:2762899-2763097-2,5204.08CGAUGUUGGUGAGGUUCAAUCmiR171MIRNAShortStack
stu-b4.04r1-72903Solanum tuberosum (Potato) 4.04chr12:6513158-6513295+12,47920.19AGAUAUUGGUGCGGUUCAAUGmiR171MIRNAShortStack
stu-b4.04r1-75701Solanum tuberosum (Potato) 4.04chr12:56022672-56022823+6981.13AUCUCUCUCAAUGAUUGGCUCAUCMIRNAShortStack
stu-b4.04r1-76091Solanum tuberosum (Potato) 4.04chr12:57810779-57811068-29,78648.18UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
stu-b4.04r1-76123Solanum tuberosum (Potato) 4.04chr12:57963401-57963670+1,358,2832,197.24UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
stu-b4.04r1-76569Solanum tuberosum (Potato) 4.04chr12:60365482-60365688+125,024202.25GGGGCAACUUGAGAUCACAUGMIRNAShortStack