| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| sly-b2.5r1-1796 | Solanum lycopersicum (Tomato) 2.5 | 1:3838777-3838967 | + | 4,154 | 2.81 | AUUCAUGAAUCGAACCUGAGACCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-4476 | Solanum lycopersicum (Tomato) 2.5 | 1:24762940-24762958 | - | 98 | 0.07 | ACGACGGAACCCACGACGGACCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-4765 | Solanum lycopersicum (Tomato) 2.5 | 1:28617863-28617883 | - | 389 | 0.26 | UGUUGUGUUUGAAACUGAUUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-4774 | Solanum lycopersicum (Tomato) 2.5 | 1:28828416-28828542 | - | 1,679 | 1.14 | ACAAGAUAGUGCCACGUAGGACA | | nearMIRNA | ShortStack |
| sly-b2.5r1-5316 | Solanum lycopersicum (Tomato) 2.5 | 1:39535076-39535109 | - | 353 | 0.24 | UAGUAGAGUCUUGCGGAACGGUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-5317 | Solanum lycopersicum (Tomato) 2.5 | 1:39562569-39562686 | - | 138 | 0.09 | AGAAGUCCGUGUCAAGCCAACUCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-5331 | Solanum lycopersicum (Tomato) 2.5 | 1:40059628-40059697 | - | 846 | 0.57 | GAUGAAUGAUAUGCAGGGCUUGUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-7668 | Solanum lycopersicum (Tomato) 2.5 | 1:70980244-70980456 | - | 3,809 | 2.58 | AUUAUGCGGACAACUUUAAAGGGU | | nearMIRNA | ShortStack |
| sly-b2.5r1-8031 | Solanum lycopersicum (Tomato) 2.5 | 1:73178496-73178519 | + | 909 | 0.62 | ACAAGAUAGUGCCACGUAGGACA | | nearMIRNA | ShortStack |
| sly-b2.5r1-8709 | Solanum lycopersicum (Tomato) 2.5 | 1:75642438-75642474 | - | 280 | 0.19 | UCAAGAAGGUUAAAGGCGGCAUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-11001 | Solanum lycopersicum (Tomato) 2.5 | 1:81905153-81905324 | + | 184 | 0.13 | AAAAACACAAUAUACUAGUGAUUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-12530 | Solanum lycopersicum (Tomato) 2.5 | 1:85705804-85705876 | - | 1,208 | 0.82 | AAAAGAAUGACCUGGUUUGACUUG | miR8019 | nearMIRNA | ShortStack |
| sly-b2.5r1-12952 | Solanum lycopersicum (Tomato) 2.5 | 1:86745245-86745356 | + | 802 | 0.54 | GAGGAUUUGAACGUUUGAUAAUGU | | nearMIRNA | ShortStack |
| sly-b2.5r1-15189 | Solanum lycopersicum (Tomato) 2.5 | 1:92762129-92762384 | + | 2,220 | 1.50 | UUGGCAUUCUGUCCACCUCC | miR394 | nearMIRNA | ShortStack |
| sly-b2.5r1-16284 | Solanum lycopersicum (Tomato) 2.5 | 1:95573060-95573082 | - | 1,250 | 0.85 | UUGUGGGACAAAAAGAAGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-17775 | Solanum lycopersicum (Tomato) 2.5 | 10:996031-996061 | + | 620 | 0.42 | UGAAACCCCGUGUAUGACAUG | | nearMIRNA | ShortStack |
| sly-b2.5r1-18515 | Solanum lycopersicum (Tomato) 2.5 | 10:2358814-2358972 | - | 2,708 | 1.83 | GAGAUAAUAGAACGCUGAUAAAGU | | nearMIRNA | ShortStack |
| sly-b2.5r1-19117 | Solanum lycopersicum (Tomato) 2.5 | 10:3437990-3438011 | - | 152 | 0.10 | UCUUGCUCAAAUGAGUAUUCCA | miR828 | nearMIRNA | ShortStack |
| sly-b2.5r1-20802 | Solanum lycopersicum (Tomato) 2.5 | 10:16038905-16038926 | - | 1,952 | 1.32 | UGGAAACUAGCAUGCAAAAUAU | | nearMIRNA | ShortStack |
| sly-b2.5r1-22026 | Solanum lycopersicum (Tomato) 2.5 | 10:34680208-34680228 | - | 238 | 0.16 | UUUGUGUCUGUGUGUAUUGUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-22028 | Solanum lycopersicum (Tomato) 2.5 | 10:34738903-34738923 | - | 201 | 0.14 | UUUGUGUCUGUGUGUAUUGUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-24514 | Solanum lycopersicum (Tomato) 2.5 | 10:53435761-53435867 | - | 838 | 0.57 | AUGAGAUGGAAUCAAUGGUUGGAU | | nearMIRNA | ShortStack |
| sly-b2.5r1-25100 | Solanum lycopersicum (Tomato) 2.5 | 10:56077055-56077186 | - | 1,576 | 1.07 | UUUGAAACUCGAAAUUUUGGCUCC | | nearMIRNA | ShortStack |
| sly-b2.5r1-25456 | Solanum lycopersicum (Tomato) 2.5 | 10:57190353-57190445 | + | 816 | 0.55 | AGGGGCGGCUCAGACAUAAUGGUG | | nearMIRNA | ShortStack |
| sly-b2.5r1-27775 | Solanum lycopersicum (Tomato) 2.5 | 10:62433748-62433937 | - | 2,448 | 1.66 | GAGGAUUAUGAUAGAGCGGAAAGU | | nearMIRNA | ShortStack |
| sly-b2.5r1-28599 | Solanum lycopersicum (Tomato) 2.5 | 10:64057358-64057381 | + | 436 | 0.30 | CUAAAUUGUAUAAUUCGCUGGCCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-30453 | Solanum lycopersicum (Tomato) 2.5 | 11:2739330-2739401 | - | 969 | 0.66 | GACGGAGUUAGAAUUUUAUAAAUC | | nearMIRNA | ShortStack |
| sly-b2.5r1-33666 | Solanum lycopersicum (Tomato) 2.5 | 11:12709884-12709970 | + | 5,165 | 3.50 | AGAAAUACUGAUCCUAGAGAGAUG | | nearMIRNA | ShortStack |
| sly-b2.5r1-35869 | Solanum lycopersicum (Tomato) 2.5 | 11:34890318-34890421 | - | 640 | 0.43 | AGAAGAUAGUGUCACGUAGGUCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-37177 | Solanum lycopersicum (Tomato) 2.5 | 11:49270558-49270619 | + | 626 | 0.42 | UUUAUUUUUGACUUAAAAGCUACU | | nearMIRNA | ShortStack |
| sly-b2.5r1-39164 | Solanum lycopersicum (Tomato) 2.5 | 11:53906456-53906493 | + | 690 | 0.47 | UAGGAAAAGGGGGCAACUGAUAGU | | nearMIRNA | ShortStack |
| sly-b2.5r1-47297 | Solanum lycopersicum (Tomato) 2.5 | 12:43824233-43824387 | + | 433 | 0.29 | UCUUGGAUUGCUUGAAGACU | | nearMIRNA | ShortStack |
| sly-b2.5r1-48202 | Solanum lycopersicum (Tomato) 2.5 | 12:50691700-50691721 | - | 105 | 0.07 | CAAAACGAUGUUGAAGAACGA | | nearMIRNA | ShortStack |
| sly-b2.5r1-54306 | Solanum lycopersicum (Tomato) 2.5 | 2:28886957-28886991 | - | 188 | 0.13 | AGAGGACGAGCAAUAUGAUAUAGC | | nearMIRNA | ShortStack |
| sly-b2.5r1-55866 | Solanum lycopersicum (Tomato) 2.5 | 2:35320876-35320900 | + | 1,847 | 1.25 | UUGAUAGAAGAUAGAGAGCAC | miR156 | nearMIRNA | ShortStack |
| sly-b2.5r1-56525 | Solanum lycopersicum (Tomato) 2.5 | 2:36527912-36527936 | - | 62 | 0.04 | UUGGUUUCCUCAAAGAAAAAAGUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-56526 | Solanum lycopersicum (Tomato) 2.5 | 2:36531303-36531359 | - | 41 | 0.03 | UUGGUUUCCUCAAAGAAAAAAGUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-64238 | Solanum lycopersicum (Tomato) 2.5 | 3:636188-636218 | + | 2,586 | 1.75 | AAUGACGGGGUCUGAGAUAAUACU | | nearMIRNA | ShortStack |
| sly-b2.5r1-64307 | Solanum lycopersicum (Tomato) 2.5 | 3:731353-731373 | + | 400 | 0.27 | UGCCAAAGAAGAUUUGCCCCG | miR399 | nearMIRNA | ShortStack |
| sly-b2.5r1-69874 | Solanum lycopersicum (Tomato) 2.5 | 3:35742406-35742455 | + | 761 | 0.52 | AAAAUCGGGCCGCGACUGGCACCC | | nearMIRNA | ShortStack |
| sly-b2.5r1-71956 | Solanum lycopersicum (Tomato) 2.5 | 3:54336538-54336571 | - | 301 | 0.20 | AGGCGAAACGGUAUCUUUUGAAUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-72921 | Solanum lycopersicum (Tomato) 2.5 | 3:56838323-56838457 | + | 1,911 | 1.29 | GUUACAAAAAGAAUGAUCGUUUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-73446 | Solanum lycopersicum (Tomato) 2.5 | 3:59023356-59023437 | - | 412 | 0.28 | AUCAGAUGAAUGGUUCGAAAGACA | | nearMIRNA | ShortStack |
| sly-b2.5r1-77091 | Solanum lycopersicum (Tomato) 2.5 | 3:68112477-68112557 | - | 2,489 | 1.69 | AUUGGACUGAAGGGAGCUCC | miR319 | nearMIRNA | ShortStack |
| sly-b2.5r1-79997 | Solanum lycopersicum (Tomato) 2.5 | 4:4093769-4093821 | - | 65,947 | 44.63 | AGAAUCUUGAUGAUGCUGCAG | miR172 | nearMIRNA | ShortStack |
| sly-b2.5r1-80395 | Solanum lycopersicum (Tomato) 2.5 | 4:4874987-4875049 | - | 686 | 0.46 | AUAAACGUCAUUGUAGUUAAACCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-80482 | Solanum lycopersicum (Tomato) 2.5 | 4:5038272-5038302 | - | 770 | 0.52 | AUCAGUUGAGACUAAGCUAAAACU | | nearMIRNA | ShortStack |
| sly-b2.5r1-81586 | Solanum lycopersicum (Tomato) 2.5 | 4:8691281-8691414 | - | 593 | 0.40 | ACAAGAUAGUGCCACGUAGACCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-81685 | Solanum lycopersicum (Tomato) 2.5 | 4:10030862-10031002 | - | 310 | 0.21 | AACCUGUGACGGGCUGUCGUGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-81902 | Solanum lycopersicum (Tomato) 2.5 | 4:12406855-12406932 | - | 339 | 0.23 | CAAAGUAGACAUGACCACGGCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-82554 | Solanum lycopersicum (Tomato) 2.5 | 4:21722964-21723214 | + | 6,071 | 4.11 | AGGGGUCGCAUAUGACUUAGGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-83413 | Solanum lycopersicum (Tomato) 2.5 | 4:37279587-37279750 | + | 1,609 | 1.09 | ACAAGAUAGUGUUACGUAGGCCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-83453 | Solanum lycopersicum (Tomato) 2.5 | 4:38358109-38358134 | - | 117 | 0.08 | GAACAAGGUAGCUGAAAGAACGGA | | nearMIRNA | ShortStack |
| sly-b2.5r1-83516 | Solanum lycopersicum (Tomato) 2.5 | 4:38770338-38770472 | - | 52 | 0.04 | UGAUCUGUUUGUUGCAACAAA | | nearMIRNA | ShortStack |
| sly-b2.5r1-86205 | Solanum lycopersicum (Tomato) 2.5 | 4:53738486-53738520 | + | 728 | 0.49 | UUGAUUAUGGUAGAAUAUUAG | | nearMIRNA | ShortStack |
| sly-b2.5r1-86716 | Solanum lycopersicum (Tomato) 2.5 | 4:55272715-55272848 | + | 1,314 | 0.89 | GAGAAUUAGGACUAUUUUGACUCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-87821 | Solanum lycopersicum (Tomato) 2.5 | 4:59338902-59338927 | + | 400 | 0.27 | GGGAGAUGGUGACGAAGAUGA | | nearMIRNA | ShortStack |
| sly-b2.5r1-88178 | Solanum lycopersicum (Tomato) 2.5 | 4:60061710-60061848 | - | 805 | 0.55 | AUAAAUUGUAUAAUUCGCUGGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-92451 | Solanum lycopersicum (Tomato) 2.5 | 5:3113141-3113266 | - | 866 | 0.59 | UUUUGAGCAUUUCUUUACCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-94292 | Solanum lycopersicum (Tomato) 2.5 | 5:7324516-7324557 | - | 233 | 0.16 | ACAAGAUAGUGUUACGUAGGCCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-98170 | Solanum lycopersicum (Tomato) 2.5 | 5:51889256-51889461 | + | 1,938 | 1.31 | AGAAGAUAGUGUCACGUAGGCCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-100164 | Solanum lycopersicum (Tomato) 2.5 | 5:61616946-61617006 | + | 663 | 0.45 | AGAGACGGAGUCAGCAUUUGAAGC | | nearMIRNA | ShortStack |
| sly-b2.5r1-100332 | Solanum lycopersicum (Tomato) 2.5 | 5:61910299-61910468 | - | 1,399 | 0.95 | AGGAUGAGAUAACAAUUACAAAUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-100419 | Solanum lycopersicum (Tomato) 2.5 | 5:62099580-62099631 | + | 612 | 0.41 | AUGACGAGUAAAAGUGAACCGAGA | | nearMIRNA | ShortStack |
| sly-b2.5r1-100883 | Solanum lycopersicum (Tomato) 2.5 | 5:62919693-62919729 | - | 1,256 | 0.85 | UCCGGAUAUAGGUUAGGGGGC | | nearMIRNA | ShortStack |
| sly-b2.5r1-102614 | Solanum lycopersicum (Tomato) 2.5 | 6:654274-654296 | + | 565 | 0.38 | GGAAUCUUGAUGAUGCUGCAU | miR172 | nearMIRNA | ShortStack |
| sly-b2.5r1-103005 | Solanum lycopersicum (Tomato) 2.5 | 6:1372248-1372272 | - | 407 | 0.28 | AAGCUCAGGAGGGAUAGCGCC | miR390 | nearMIRNA | ShortStack |
| sly-b2.5r1-103913 | Solanum lycopersicum (Tomato) 2.5 | 6:3341545-3341673 | + | 440 | 0.30 | AUACAAACAUGUCUGAAUACAUUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-105864 | Solanum lycopersicum (Tomato) 2.5 | 6:25490222-25490252 | - | 140 | 0.10 | AGGAGAGGGAUGUAUAAUGAAAAA | | nearMIRNA | ShortStack |
| sly-b2.5r1-107795 | Solanum lycopersicum (Tomato) 2.5 | 6:34920148-34920228 | - | 283 | 0.19 | AGGAGGACAAUUUCAAUAUGAUUC | | nearMIRNA | ShortStack |
| sly-b2.5r1-114102 | Solanum lycopersicum (Tomato) 2.5 | 6:49339348-49339544 | - | 24,569 | 16.63 | UGAAGCUGCCAGCAUGAUCUA | miR167 | nearMIRNA | ShortStack |
| sly-b2.5r1-114521 | Solanum lycopersicum (Tomato) 2.5 | 7:739631-739831 | + | 5,345 | 3.62 | AUUAACUGAGUGAGCAUCUGAGAA | | nearMIRNA | ShortStack |
| sly-b2.5r1-118046 | Solanum lycopersicum (Tomato) 2.5 | 7:16707188-16707269 | + | 341 | 0.23 | UACUGUACACCUUUGGGCUUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-121161 | Solanum lycopersicum (Tomato) 2.5 | 7:56355276-56355302 | - | 136 | 0.09 | UCAACAUCUUGCUUGGUUUUUAUC | | nearMIRNA | ShortStack |
| sly-b2.5r1-121654 | Solanum lycopersicum (Tomato) 2.5 | 7:57530302-57530326 | - | 347 | 0.24 | AUGUAUUGGCUCGGUGUAAACAAC | | nearMIRNA | ShortStack |
| sly-b2.5r1-121787 | Solanum lycopersicum (Tomato) 2.5 | 7:57910732-57910768 | + | 156 | 0.11 | UUUGUGUCUCACACAACAGAC | | nearMIRNA | ShortStack |
| sly-b2.5r1-122170 | Solanum lycopersicum (Tomato) 2.5 | 7:58693963-58694082 | - | 1,412 | 0.96 | UCAACUGACCGUAACUUUUGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-125813 | Solanum lycopersicum (Tomato) 2.5 | 7:66518134-66518237 | - | 941 | 0.64 | AAGCAUGAGAUUUGAUUUUUGGAU | | nearMIRNA | ShortStack |
| sly-b2.5r1-125999 | Solanum lycopersicum (Tomato) 2.5 | 7:66932294-66932393 | - | 866 | 0.59 | AGGACGAGCACUGGCUAACAGCUG | | nearMIRNA | ShortStack |
| sly-b2.5r1-128107 | Solanum lycopersicum (Tomato) 2.5 | 8:3438254-3438301 | - | 208 | 0.14 | AGGUUUAGGAGCAAAGUACAAUU | miR10535 | nearMIRNA | ShortStack |
| sly-b2.5r1-130664 | Solanum lycopersicum (Tomato) 2.5 | 8:31832153-31832260 | + | 195 | 0.13 | UGAGGCACCAUGAAACUGGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-132618 | Solanum lycopersicum (Tomato) 2.5 | 8:51933503-51933523 | - | 153 | 0.10 | UGACAGAAGAGCGUGAGCAC | miR156 | nearMIRNA | ShortStack |
| sly-b2.5r1-134569 | Solanum lycopersicum (Tomato) 2.5 | 8:56612252-56612483 | + | 39,205 | 26.53 | ACGAGAGUCAUCUGUGACAGG | miR1919 | nearMIRNA | ShortStack |
| sly-b2.5r1-134983 | Solanum lycopersicum (Tomato) 2.5 | 8:57599711-57599734 | + | 341 | 0.23 | GGCAGUCGUCUUUAGCUAUA | | nearMIRNA | ShortStack |
| sly-b2.5r1-138845 | Solanum lycopersicum (Tomato) 2.5 | 9:328979-329001 | + | 464 | 0.31 | AAGCAAUGUCAAGUAACUGAU | | nearMIRNA | ShortStack |
| sly-b2.5r1-143776 | Solanum lycopersicum (Tomato) 2.5 | 9:33740559-33740588 | + | 668 | 0.45 | AGAAGAUAGUGUCACGUAGGUCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-145002 | Solanum lycopersicum (Tomato) 2.5 | 9:54066918-54067129 | - | 694 | 0.47 | AGAAGAUAGUGUCAUGUAGGUCA | | nearMIRNA | ShortStack |
| sly-b2.5r1-145801 | Solanum lycopersicum (Tomato) 2.5 | 9:59172714-59172827 | - | 940 | 0.64 | UCGAGAUUUAAUAGAGUUGAACU | | nearMIRNA | ShortStack |
| sly-b2.5r1-146609 | Solanum lycopersicum (Tomato) 2.5 | 9:62056108-62056129 | + | 858 | 0.58 | CUGAAAUAUAAAGUUUGUGUU | | nearMIRNA | ShortStack |
| sly-b2.5r1-147380 | Solanum lycopersicum (Tomato) 2.5 | 9:63978366-63978553 | + | 183,932 | 124.49 | AGUGAAGCUGCCAGCAUGAUCUA | miR167 | nearMIRNA | ShortStack |
| sly-b2.5r1-149751 | Solanum lycopersicum (Tomato) 2.5 | 9:69376518-69376709 | + | 1,415 | 0.96 | GUUAAUAUUUUAUACACUUUGGGC | | nearMIRNA | ShortStack |
| sly-b2.5r1-151171 | Solanum lycopersicum (Tomato) 2.5 | SL2.40sc03614:1743-1787 | - | 312 | 0.21 | AACCUGUGACGGGCUGUCGUGCCU | | nearMIRNA | ShortStack |
| sly-b2.5r1-151309 | Solanum lycopersicum (Tomato) 2.5 | SL2.40sc03802:1731-1757 | - | 183 | 0.12 | GAGGAAGAUGGAGAACGUGAGAAA | | nearMIRNA | ShortStack |
Data from Lunardon et al. (2020)