het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Solanum lycopersicum (Tomato) genome build 2.5 (sly-b2.5)

Version v2.5 of Solanum lycopersicum cv. Heinz 1706 from Ensembl Plants

Locus type

Annotation source

Name contains:

Family contains:

NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
sly-b2.5r1-1457Solanum lycopersicum (Tomato) 2.51:3116646-3116857+3,8542.61UGGAAGAGGUGAUUGGAGAAAMIRNAShortStack
sly-b2.5r1-1990Solanum lycopersicum (Tomato) 2.51:4310504-4310568-4370.30CACACUCAGCAUGGCUCCAUCMIRNAShortStack
sly-b2.5r1-9705Solanum lycopersicum (Tomato) 2.51:78368887-78369080+117,98979.86CUAGAUUCACGCACAAGCUCGmiR403MIRNAShortStack
sly-b2.5r1-9958Solanum lycopersicum (Tomato) 2.51:78996927-78997012+6590.45UUGGCAAUAUGGUAGGGGAUUMIRNAShortStack
sly-b2.5r1-11581Solanum lycopersicum (Tomato) 2.51:83238839-83239066-300,050203.08UUUAGCAAGAGUUGUUUUACCmiR6024MIRNAShortStack
sly-b2.5r1-13212Solanum lycopersicum (Tomato) 2.51:87406162-87406383+1,380,127934.08UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
sly-b2.5r1-14188Solanum lycopersicum (Tomato) 2.51:89971193-89971422+74,62850.51UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
sly-b2.5r1-14433Solanum lycopersicum (Tomato) 2.51:90607391-90607497+12,0068.13UAUUUCUGCAGCUUUGGAAUUMIRNAShortStack
sly-b2.5r1-14596Solanum lycopersicum (Tomato) 2.51:91031990-91032086-3,9042.64ACAGGGACGAGGCAGCGCAUGmiR408MIRNAShortStack
sly-b2.5r1-14600Solanum lycopersicum (Tomato) 2.51:91040511-91040605-38,98226.38ACGGGGACGAGCCAGAGCAUGmiR408MIRNAShortStack
sly-b2.5r1-16981Solanum lycopersicum (Tomato) 2.51:97204387-97204619+5,6223.81UCAAUGCUACAUACUCAUCCCmiR5304MIRNAShortStack
sly-b2.5r1-27893Solanum lycopersicum (Tomato) 2.510:62660113-62660385-4,4733.03UUAUUUGGGGUAGAUGAGCUCMIRNAShortStack
sly-b2.5r1-27900Solanum lycopersicum (Tomato) 2.510:62674268-62674379+1360.09UGCUUGUUUCGAUCUUUUAUCMIRNAShortStack
sly-b2.5r1-29351Solanum lycopersicum (Tomato) 2.511:294561-294846-5,5903.78UCAAGUAGAUGCAUCACCUGCUUAMIRNAShortStack
sly-b2.5r1-29595Solanum lycopersicum (Tomato) 2.511:917796-917903-5440.37UUAUCUGGAGUUACAAGUUGAMIRNAShortStack
sly-b2.5r1-31088Solanum lycopersicum (Tomato) 2.511:4024600-4024821+13,7139.28UUCGAUACGCACCUGAAUCGAMIRNAShortStack
sly-b2.5r1-37586Solanum lycopersicum (Tomato) 2.511:50496616-50496698+4090.28UUCAAAUCUGACAACGUGAACMIRNAShortStack
sly-b2.5r1-41082Solanum lycopersicum (Tomato) 2.512:1976415-1976539-1,8611.26AUUUCUCUGGUGCUUACUCAACMIRNAShortStack
sly-b2.5r1-41083Solanum lycopersicum (Tomato) 2.512:1977696-1977951-771,918522.44UUGGCUGAGUGAGCAUCACGGmiR9471MIRNAShortStack
sly-b2.5r1-43419Solanum lycopersicum (Tomato) 2.512:6988781-6989068-209,120141.53UGUCGCAGAUGACUUUCGCCCmiR1919MIRNAShortStack
sly-b2.5r1-45490Solanum lycopersicum (Tomato) 2.512:36532689-36532922-62,32042.18ACACACUCUGCAUUCAAUUAAAUUMIRNAShortStack
sly-b2.5r1-47317Solanum lycopersicum (Tomato) 2.512:43883731-43884013-37,95725.69UUGGACUGAAGGGUUUCCUUCmiR319MIRNAShortStack
sly-b2.5r1-49254Solanum lycopersicum (Tomato) 2.512:61968259-61968522+4,4102.99UAAAUGUUUUCCGAGUAUCUUUMIRNAShortStack
sly-b2.5r1-49494Solanum lycopersicum (Tomato) 2.512:62363907-62364021+1490.10AGAUUCUUUAUUUAUGAAUUAUGUMIRNAShortStack
sly-b2.5r1-50935Solanum lycopersicum (Tomato) 2.512:65227903-65228171+1,680,0891,137.10UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
sly-b2.5r1-54347Solanum lycopersicum (Tomato) 2.52:29079169-29079337+1620.11AGAUGAUUAUGUGCUCUUGCAMIRNAShortStack
sly-b2.5r1-55043Solanum lycopersicum (Tomato) 2.52:33343969-33344079-6,0644.10UAUUGGCCUGGUUCACUCAGAmiR171MIRNAShortStack
sly-b2.5r1-55865Solanum lycopersicum (Tomato) 2.52:35319698-35319939+63,43342.93UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
sly-b2.5r1-59077Solanum lycopersicum (Tomato) 2.52:42398855-42398982-2,3301.58AGGAGAUGUAUGCAAGAGCAAMIRNAShortStack
sly-b2.5r1-60842Solanum lycopersicum (Tomato) 2.52:46752760-46752989-5,9304.01UAUUGGCCUGGUUCACUCAGAmiR171MIRNAShortStack
sly-b2.5r1-61995Solanum lycopersicum (Tomato) 2.52:49955351-49955563+10,5067.11UCGCAGGAGAGAUGGCACUUGCmiR3627MIRNAShortStack
sly-b2.5r1-64835Solanum lycopersicum (Tomato) 2.53:1834314-1834409+1,9201.30UUUUCUGAGAAAACAAAUAGUMIRNAShortStack
sly-b2.5r1-65367Solanum lycopersicum (Tomato) 2.53:3081748-3081944+9,4136.37AUCAUGCGAUCUCUUCGGAAUmiR393MIRNAShortStack
sly-b2.5r1-65740Solanum lycopersicum (Tomato) 2.53:3816898-3816975-1,4180.96CGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
sly-b2.5r1-65741Solanum lycopersicum (Tomato) 2.53:3818697-3818789+5,8223.94GGGCUACUCUCUAUUGGCAUGmiR399MIRNAShortStack
sly-b2.5r1-65742Solanum lycopersicum (Tomato) 2.53:3822303-3822467+8750.59UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
sly-b2.5r1-65759Solanum lycopersicum (Tomato) 2.53:3964638-3964756-2,1531.46CGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
sly-b2.5r1-71199Solanum lycopersicum (Tomato) 2.53:52477046-52477241-22,180,29015,011.79UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
sly-b2.5r1-72770Solanum lycopersicum (Tomato) 2.53:56451805-56452076+61,64941.73UUGGACUGAAGGGAGCUCCUUmiR319MIRNAShortStack
sly-b2.5r1-73712Solanum lycopersicum (Tomato) 2.53:59621703-59621807+3,1782.15AGCAUAGUAAAGAGUAGAGACUMIRNAShortStack
sly-b2.5r1-75626Solanum lycopersicum (Tomato) 2.53:64438413-64438665+329,256222.84UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
sly-b2.5r1-75760Solanum lycopersicum (Tomato) 2.53:64766206-64766484+144,39397.73UUUCCAAUUCCACCCAUUCCUAmiR482MIRNAShortStack
sly-b2.5r1-76638Solanum lycopersicum (Tomato) 2.53:67035201-67035315-2,0631.40UGAACUCUCUCCCUCAAUGGCUmiR1446MIRNAShortStack
sly-b2.5r1-76928Solanum lycopersicum (Tomato) 2.53:67732957-67733245+2,441,3761,652.34UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAShortStack
sly-b2.5r1-77633Solanum lycopersicum (Tomato) 2.53:69462359-69462488+4,6553.15AGAAUAGUUGGCUCAUUAGGUUAAMIRNAShortStack
sly-b2.5r1-78876Solanum lycopersicum (Tomato) 2.54:1580079-1580267-13,5139.15GAUAGUACAGGUAGGAAACUCACAMIRNAShortStack
sly-b2.5r1-79588Solanum lycopersicum (Tomato) 2.54:3142591-3142673+3040.21UGGGGAGGGUGGUGUGUACGCMIRNAShortStack
sly-b2.5r1-84427Solanum lycopersicum (Tomato) 2.54:46759992-46760123+900.06UGGAUCCCGAAUCUUGAGUUUMIRNAShortStack
sly-b2.5r1-86192Solanum lycopersicum (Tomato) 2.54:53722575-53722694+5840.40UGCAAUGUACUCAAAUCGUUAUCMIRNAShortStack
sly-b2.5r1-87034Solanum lycopersicum (Tomato) 2.54:56023690-56023965+913,096617.99UCUUUCCUACUCCUCCCAUACCmiR482MIRNAShortStack
sly-b2.5r1-90819Solanum lycopersicum (Tomato) 2.54:65891095-65891265+23,97216.22UUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
sly-b2.5r1-101049Solanum lycopersicum (Tomato) 2.55:63201268-63201458+52,02135.21GGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
sly-b2.5r1-101986Solanum lycopersicum (Tomato) 2.55:65132398-65132690+13,2338.96GAGAAUGGUAGAGGGUCGGACCmiR9479MIRNAShortStack
sly-b2.5r1-102113Solanum lycopersicum (Tomato) 2.55:65436279-65436448-14,86210.06UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
sly-b2.5r1-103103Solanum lycopersicum (Tomato) 2.56:1522058-1522244-77,68552.58AGUGGACAAGUAAAGGUGGAUGGAMIRNAShortStack
sly-b2.5r1-104153Solanum lycopersicum (Tomato) 2.56:4541824-4542016+193,964131.28ACGCAGGAGAGAUGAUGCUGGAmiR391MIRNAShortStack
sly-b2.5r1-108852Solanum lycopersicum (Tomato) 2.56:37388138-37388311-34,18523.14UCUUGCCAAUACCGCCCAUUCCmiR482MIRNAShortStack
sly-b2.5r1-111376Solanum lycopersicum (Tomato) 2.56:43073166-43073334+213,244144.33UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
sly-b2.5r1-111649Solanum lycopersicum (Tomato) 2.56:43739895-43740080+4,9853.37UUGGGAAAGGGAACAACUGAUAGUmiR9477MIRNAShortStack
sly-b2.5r1-112933Solanum lycopersicum (Tomato) 2.56:46528820-46529017+35,98124.35AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
sly-b2.5r1-115428Solanum lycopersicum (Tomato) 2.57:2628685-2628946-755,465511.31UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
sly-b2.5r1-115681Solanum lycopersicum (Tomato) 2.57:3076302-3076410+4,2112.85UGGCUGUAAAUCUAAACUCGUmiR9473MIRNAShortStack
sly-b2.5r1-119906Solanum lycopersicum (Tomato) 2.57:51180239-51180416+3,9722.69UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
sly-b2.5r1-123014Solanum lycopersicum (Tomato) 2.57:60765566-60765818+12,1688.24UUGAGCCGCGUCAAUAUCUCUmiR171MIRNAShortStack
sly-b2.5r1-123043Solanum lycopersicum (Tomato) 2.57:60813523-60813742+13,3039.00UGAUUGAGCCGUGCCAAUAUCmiR171MIRNAShortStack
sly-b2.5r1-126552Solanum lycopersicum (Tomato) 2.58:395243-395355+1,9701.33UUUGUUGGUGCAACUGGCAUUCUCMIRNAShortStack
sly-b2.5r1-126648Solanum lycopersicum (Tomato) 2.58:558720-558992+707,252478.67UCGCUUGGUGCAGGUCGGGACmiR168MIRNAShortStack
sly-b2.5r1-127568Solanum lycopersicum (Tomato) 2.58:2380732-2380857-1,1080.75UUGGAGUGCGUACUUGCUAGUMIRNAShortStack
sly-b2.5r1-127906Solanum lycopersicum (Tomato) 2.58:2978421-2978599+355,880240.86UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
sly-b2.5r1-132604Solanum lycopersicum (Tomato) 2.58:51913626-51913876-6,0104.07UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
sly-b2.5r1-132620Solanum lycopersicum (Tomato) 2.58:51934132-51934281-1,9581.33GCUCACUGCUCUAUCUGUCACCmiR156MIRNAShortStack
sly-b2.5r1-132622Solanum lycopersicum (Tomato) 2.58:51934609-51934773-12,5228.48UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
sly-b2.5r1-132653Solanum lycopersicum (Tomato) 2.58:52066987-52067162+14,1929.61UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
sly-b2.5r1-134976Solanum lycopersicum (Tomato) 2.58:57585480-57585640+32,58722.06UGGCAAGCAUCUUUGGCGACUmiR169MIRNAShortStack
sly-b2.5r1-138681Solanum lycopersicum (Tomato) 2.58:65694516-65694808+4,679,2363,166.94UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
sly-b2.5r1-139443Solanum lycopersicum (Tomato) 2.59:1677474-1677663+6,6244.48AGGUGUAGGUGUUCAUGCAGAmiR530MIRNAShortStack
sly-b2.5r1-142093Solanum lycopersicum (Tomato) 2.59:8388170-8388372+28,38919.21AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
sly-b2.5r1-142826Solanum lycopersicum (Tomato) 2.59:14544027-14544154+6100.41UGAUGAAGAUAAGAAAUGAUCMIRNAShortStack
sly-b2.5r1-147389Solanum lycopersicum (Tomato) 2.59:63987057-63987310+236,979160.39UGAAGCUGCCAGCAUGAUCUAmiR167MIRNAShortStack
sly-b2.5r1-147852Solanum lycopersicum (Tomato) 2.59:65283871-65283926+7860.53AAGAAAAUAAAGACUUCACAGACUMIRNAShortStack