het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Medicago truncatula (Barrel Medic) genome build 4.0 (mtr-b4.0)

Version v4.0 of Medicago truncatula cv. A17 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
mtr-b4.0r1-1062Medicago truncatula (Barrel Medic) 4.0chr1:3310058-3310326-19,48822.61UUGACAGAAGAGGGUGAGCACAmiR156MIRNAShortStack
mtr-b4.0r1-1326Medicago truncatula (Barrel Medic) 4.0chr1:4043018-4043164-381,633442.82UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
mtr-b4.0r1-2201Medicago truncatula (Barrel Medic) 4.0chr1:6261832-6261969+3910.45AUCGUGAUUCUGUCAAACUCGMIRNAShortStack
mtr-b4.0r1-5375Medicago truncatula (Barrel Medic) 4.0chr1:16868421-16868507+4240.49GAGGGGUUUGGGUGAGAGACAMIRNAShortStack
mtr-b4.0r1-5996Medicago truncatula (Barrel Medic) 4.0chr1:19437894-19438018-9,47010.99AUUCAGUGACUUUAGGGCGGGMIRNAShortStack
mtr-b4.0r1-7882Medicago truncatula (Barrel Medic) 4.0chr1:27837820-27837977+1,1681.36AUUGAUUUGAACUUUUGGACCMIRNAShortStack
mtr-b4.0r1-8114Medicago truncatula (Barrel Medic) 4.0chr1:28422450-28422621+32,31637.50UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
mtr-b4.0r1-8828Medicago truncatula (Barrel Medic) 4.0chr1:30749026-30749118-5800.67AGAUGAAAAAUUUUGAAGGGACCAMIRNAShortStack
mtr-b4.0r1-9752Medicago truncatula (Barrel Medic) 4.0chr1:33329989-33330274-464,333538.78UCGGACCAGGCUUCAUUCCCCmiR166MIRNAShortStack
mtr-b4.0r1-10143Medicago truncatula (Barrel Medic) 4.0chr1:34472301-34472452+13,51015.68CAGCCAAGGAUGACUUGCCGGmiR169MIRNAShortStack
mtr-b4.0r1-10656Medicago truncatula (Barrel Medic) 4.0chr1:36033143-36033352-143,526166.54UGAAGCUGCCAGCAUGAUCUGAmiR167MIRNAShortStack
mtr-b4.0r1-11782Medicago truncatula (Barrel Medic) 4.0chr1:39521550-39521650+19,61622.76UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
mtr-b4.0r1-12778Medicago truncatula (Barrel Medic) 4.0chr1:42480668-42480792+87,719101.78AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
mtr-b4.0r1-15373Medicago truncatula (Barrel Medic) 4.0chr1:49429729-49429991-233,866271.36UUACCGAUUCCACCCAUUCCUAmiR2118MIRNAShortStack
mtr-b4.0r1-16811Medicago truncatula (Barrel Medic) 4.0chr2:839236-839510-4,157,2654,823.81UCUCGGACCAGGCUUCAUUCCmiR166MIRNAShortStack
mtr-b4.0r1-17042Medicago truncatula (Barrel Medic) 4.0chr2:1465640-1465896-8,91210.34CGUGACAACACAUCAUUGGAUGCAmiR5745MIRNAShortStack
mtr-b4.0r1-17216Medicago truncatula (Barrel Medic) 4.0chr2:2006796-2006875+6910.80UCUUGUUUUUACUUUGUUUCCMIRNAShortStack
mtr-b4.0r1-19718Medicago truncatula (Barrel Medic) 4.0chr2:9094328-9094550+8951.04UGACCUAAUGGGACAGUCAGGMIRNAShortStack
mtr-b4.0r1-20067Medicago truncatula (Barrel Medic) 4.0chr2:10123125-10123213-3,7074.30UGCCUGGCUCCCUGAAUGCCAmiR160MIRNAShortStack
mtr-b4.0r1-20860Medicago truncatula (Barrel Medic) 4.0chr2:12795858-12796085-23,48627.25UGGAUUUCGUAUUUCUUUGGUAmiR5212MIRNAShortStack
mtr-b4.0r1-21222Medicago truncatula (Barrel Medic) 4.0chr2:13644665-13644894-3,5144.08UGAAUAAGGGGUUAUCAAGGCMIRNAShortStack
mtr-b4.0r1-23816Medicago truncatula (Barrel Medic) 4.0chr2:24139158-24139345+282,023327.24UACGUGUGUCUUCACCUCUGAAmiR5213MIRNAShortStack
mtr-b4.0r1-27447Medicago truncatula (Barrel Medic) 4.0chr2:37124658-37124868+3,5854.16UUGAGCCGCGUCAAUAUCUUGmiR171MIRNAShortStack
mtr-b4.0r1-28640Medicago truncatula (Barrel Medic) 4.0chr2:40696462-40696614-418,949486.12AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
mtr-b4.0r1-29444Medicago truncatula (Barrel Medic) 4.0chr2:42830474-42830693-120,281139.57GACAUGAAUGCAGAACUGGAAmiR2086MIRNAShortStack
mtr-b4.0r1-30617Medicago truncatula (Barrel Medic) 4.0chr3:847045-847302-61,40571.25UGAGGGGCUGUUUGAAAGCGGMIRNAShortStack
mtr-b4.0r1-35147Medicago truncatula (Barrel Medic) 4.0chr3:24264446-24264545+14,05516.31UAGGUUUGAGAAAAUGGGCAGmiR2661MIRNAShortStack
mtr-b4.0r1-35889Medicago truncatula (Barrel Medic) 4.0chr3:26834609-26834838+21,47324.92AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
mtr-b4.0r1-36154Medicago truncatula (Barrel Medic) 4.0chr3:27827953-27828176+6,5367.58UUACAAUUCCGCAAUGAUUAUMIRNAShortStack
mtr-b4.0r1-36294Medicago truncatula (Barrel Medic) 4.0chr3:28429429-28429655+134,872156.50UUGGACUGAAGGGAGCUCCCUmiR319MIRNAShortStack
mtr-b4.0r1-36961Medicago truncatula (Barrel Medic) 4.0chr3:30584093-30584298-332,101385.35AGAAUCUUGAUGAUGCUGCAGmiR172MIRNAShortStack
mtr-b4.0r1-37410Medicago truncatula (Barrel Medic) 4.0chr3:31715488-31715592+2,6503.08UAAAUGUGUUGGAAUUAAGGUUmiR5210MIRNAShortStack
mtr-b4.0r1-37564Medicago truncatula (Barrel Medic) 4.0chr3:32125335-32125486+16,34518.97UUAAUCUAGGAAAUUACACUCGmiR1509MIRNAShortStack
mtr-b4.0r1-43286Medicago truncatula (Barrel Medic) 4.0chr3:48230097-48230361+829,040961.96UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
mtr-b4.0r1-43550Medicago truncatula (Barrel Medic) 4.0chr3:48955730-48955856-44,10851.18UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
mtr-b4.0r1-43882Medicago truncatula (Barrel Medic) 4.0chr3:49860599-49860815+1,5121.75CCUUAUUUCGAAAGCCCUCCCCUCMIRNAShortStack
mtr-b4.0r1-45245Medicago truncatula (Barrel Medic) 4.0chr3:53721718-53721872-15,78118.31UUUGGCAUUCUGUCCACCUCCmiR394MIRNAShortStack
mtr-b4.0r1-47165Medicago truncatula (Barrel Medic) 4.0chr4:4052268-4052366-3,5764.15AAGCUCAGGAGGGAUAGCGCCmiR390MIRNAShortStack
mtr-b4.0r1-50250Medicago truncatula (Barrel Medic) 4.0chr4:17270751-17270972-107,645124.90UUGAGCCGCGUCAAUAUCUCGmiR171MIRNAShortStack
mtr-b4.0r1-51343Medicago truncatula (Barrel Medic) 4.0chr4:21427156-21427337+49,61657.57AGAAUCUUGAUGAUGCUGCAUmiR172MIRNAShortStack
mtr-b4.0r1-52741Medicago truncatula (Barrel Medic) 4.0chr4:25787039-25787193+102,062118.43UGAAGCUGCCAGCAUGAUCUUmiR167MIRNAShortStack
mtr-b4.0r1-55643Medicago truncatula (Barrel Medic) 4.0chr4:34335210-34335389-13,60315.78UUUAUUCUCAGUUUGUUGCUCmiR2634MIRNAShortStack
mtr-b4.0r1-59922Medicago truncatula (Barrel Medic) 4.0chr4:46038017-46038225-70,55581.87UCGAUAAACCUCUGCAUCCAGmiR162MIRNAShortStack
mtr-b4.0r1-60423Medicago truncatula (Barrel Medic) 4.0chr4:47495918-47496115+31,64636.72UUGAGCCGCGCCAAUAUCACUmiR171MIRNAShortStack
mtr-b4.0r1-60454Medicago truncatula (Barrel Medic) 4.0chr4:47580870-47581084+290,396336.96UUCCACAGCUUUCUUGAACUUmiR396MIRNAShortStack
mtr-b4.0r1-60967Medicago truncatula (Barrel Medic) 4.0chr4:48984847-48985070+15,44317.92UUCAUUUCUAAAAUAGGCAUUGmiR1514MIRNAShortStack
mtr-b4.0r1-61537Medicago truncatula (Barrel Medic) 4.0chr4:50610876-50610961+4680.54UGAUAUCAGGCAACUCGGUCCmiR5563MIRNAShortStack
mtr-b4.0r1-62443Medicago truncatula (Barrel Medic) 4.0chr4:52961697-52961818-3,3313.87UGAGCCAAAGAUGACUUGCCGGmiR169MIRNAShortStack
mtr-b4.0r1-62450Medicago truncatula (Barrel Medic) 4.0chr4:52967652-52967809-17,03319.76UGAGCCAAAGAUGACUUGCCGGmiR169MIRNAShortStack
mtr-b4.0r1-63144Medicago truncatula (Barrel Medic) 4.0chr4:54672385-54672594-114,710133.10UGACAGAAGAGAGUGAGCACmiR156MIRNAShortStack
mtr-b4.0r1-66369Medicago truncatula (Barrel Medic) 4.0chr5:7005192-7005290-3,0943.59UUGUGAUUGGCCAAUGGUACCMIRNAShortStack
mtr-b4.0r1-67310Medicago truncatula (Barrel Medic) 4.0chr5:9381784-9381921+1,5671.82CUUUUUCUUCAUUUUAUAGAUGMIRNAShortStack
mtr-b4.0r1-67429Medicago truncatula (Barrel Medic) 4.0chr5:9733652-9733760-2,1382.48UUGCUCGGAUUUCUGCAAUGUCMIRNAShortStack
mtr-b4.0r1-67739Medicago truncatula (Barrel Medic) 4.0chr5:10535708-10535927+475,019551.18UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
mtr-b4.0r1-69830Medicago truncatula (Barrel Medic) 4.0chr5:17079434-17079687-2,5933.01AGUUCCUCUGAAUGCUUCAAAmiR395MIRNAShortStack
mtr-b4.0r1-69832Medicago truncatula (Barrel Medic) 4.0chr5:17082391-17082472-1,6341.90UGAAGUGUUUGGGGGAACUCUmiR395MIRNAShortStack
mtr-b4.0r1-70399Medicago truncatula (Barrel Medic) 4.0chr5:19044890-19045085+62,87472.96UUACCUAUUCCACCAAUUCCAUmiR1510MIRNAShortStack
mtr-b4.0r1-70701Medicago truncatula (Barrel Medic) 4.0chr5:20147224-20147470+42,86249.73UAGAUUUAGAAUUAGAAAAGCmiR5558MIRNAShortStack
mtr-b4.0r1-72772Medicago truncatula (Barrel Medic) 4.0chr5:29540191-29540374-120,401139.71UGAGAAUGUUAGAUACGGAACmiR5250MIRNAShortStack
mtr-b4.0r1-73581Medicago truncatula (Barrel Medic) 4.0chr5:32241895-32242097+3,2783.80UAGAGAUUUGUUUAACAGCCAmiR5757MIRNAShortStack
mtr-b4.0r1-73727Medicago truncatula (Barrel Medic) 4.0chr5:32770327-32770420-2,5352.94UCGGCUGUACUGUCCUUCAUGAmiR2623MIRNAShortStack
mtr-b4.0r1-74151Medicago truncatula (Barrel Medic) 4.0chr5:34277352-34277498-13,35415.50AGAAUCCUGAUGAUGCUGCAGmiR172MIRNAShortStack
mtr-b4.0r1-74428Medicago truncatula (Barrel Medic) 4.0chr5:34957371-34957603+4,4425.15UCCAAAGGGAUCGCAUUGAUCCmiR393MIRNAShortStack
mtr-b4.0r1-75776Medicago truncatula (Barrel Medic) 4.0chr5:38761912-38762168+163,850190.12UGUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
mtr-b4.0r1-75795Medicago truncatula (Barrel Medic) 4.0chr5:38824693-38824843-1,8632.16UAGCCAAUGGGAAUAACAGAUmiR2648MIRNAShortStack
mtr-b4.0r1-76831Medicago truncatula (Barrel Medic) 4.0chr5:41814397-41814584-9091.06AGUAAAAGUUUGCAUUUUAGAMIRNAShortStack
mtr-b4.0r1-77286Medicago truncatula (Barrel Medic) 4.0chr5:43013993-43014097+5,9876.95UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAShortStack
mtr-b4.0r1-78590Medicago truncatula (Barrel Medic) 4.0chr6:2989376-2989612+27,24731.62UCGCAGGAGUGAUGGGACCGGCmiR5211MIRNAShortStack
mtr-b4.0r1-80323Medicago truncatula (Barrel Medic) 4.0chr6:8151438-8151679+2,6413.06UUGUUUGCACAUCAAGUUAUGCMIRNAShortStack
mtr-b4.0r1-81928Medicago truncatula (Barrel Medic) 4.0chr6:14305211-14305332+1,4341.66CGUUCUAUAUUUUCUCCCACCMIRNAShortStack
mtr-b4.0r1-81932Medicago truncatula (Barrel Medic) 4.0chr6:14311649-14311743+1,0381.20CGUUCUAUAUUUUCUCCCACCMIRNAShortStack
mtr-b4.0r1-83304Medicago truncatula (Barrel Medic) 4.0chr6:22869551-22869644+5250.61UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
mtr-b4.0r1-83307Medicago truncatula (Barrel Medic) 4.0chr6:22915300-22915382+1,8052.09UGCCAAAGGAGAGCUGCCCUGmiR399MIRNAShortStack
mtr-b4.0r1-83453Medicago truncatula (Barrel Medic) 4.0chr6:24054603-24054709+4,5865.32AGGAAUUUGAGCUCAAUGACUCUGMIRNAShortStack
mtr-b4.0r1-84905Medicago truncatula (Barrel Medic) 4.0chr6:30545771-30546060-6,2797.29UUUGGUACUUCGUCGAUUUGAUmiR2597MIRNAShortStack
mtr-b4.0r1-84925Medicago truncatula (Barrel Medic) 4.0chr6:30617131-30617329-727,647844.31UUGACAGAAGAUAGAGGGCACmiR156MIRNAShortStack
mtr-b4.0r1-86713Medicago truncatula (Barrel Medic) 4.0chr7:753030-753203+9571.11UUAUGCAAGUAGAUAAGCUCAmiR5231MIRNAShortStack
mtr-b4.0r1-86848Medicago truncatula (Barrel Medic) 4.0chr7:1443265-1443413-2,3442.72GACCCUCAAAGGCUUCCACUmiR5037MIRNAShortStack
mtr-b4.0r1-86850Medicago truncatula (Barrel Medic) 4.0chr7:1451282-1451371-5560.65GACCCUCAAAGGCUUCCACUmiR5037MIRNAShortStack
mtr-b4.0r1-87489Medicago truncatula (Barrel Medic) 4.0chr7:3768655-3768912-461,481535.47UGUGUUCUCAGGUCGCCCCUGmiR398MIRNAShortStack
mtr-b4.0r1-88193Medicago truncatula (Barrel Medic) 4.0chr7:5953549-5953675-6,0347.00UUGAUUCUCAUCACAACUUGGmiR4415MIRNAShortStack
mtr-b4.0r1-88886Medicago truncatula (Barrel Medic) 4.0chr7:8403748-8403929-2,1032.44CAAGGGGUAUUGCGGAGGAUAmiR5259MIRNAShortStack
mtr-b4.0r1-90130Medicago truncatula (Barrel Medic) 4.0chr7:16808454-16808681-52,72861.18UUUCGUUCCAUACAUCAUCUAAMIRNAShortStack
mtr-b4.0r1-90646Medicago truncatula (Barrel Medic) 4.0chr7:19560454-19560605+365,635424.26UUUCCAAUUCCACCCAUUCCUAmiR482MIRNAShortStack
mtr-b4.0r1-91610Medicago truncatula (Barrel Medic) 4.0chr7:23550077-23550255-6,9938.11UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
mtr-b4.0r1-91619Medicago truncatula (Barrel Medic) 4.0chr7:23572873-23573066-2,9073.37UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
mtr-b4.0r1-91620Medicago truncatula (Barrel Medic) 4.0chr7:23577833-23577896-5840.68UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
mtr-b4.0r1-91621Medicago truncatula (Barrel Medic) 4.0chr7:23584730-23584815-1,0981.27UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
mtr-b4.0r1-91624Medicago truncatula (Barrel Medic) 4.0chr7:23607196-23607490-3,3183.85UAAUCUGCAUCCUGAGGUUUAmiR2111MIRNAShortStack
mtr-b4.0r1-92599Medicago truncatula (Barrel Medic) 4.0chr7:26766515-26766767+206,275239.35UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
mtr-b4.0r1-94134Medicago truncatula (Barrel Medic) 4.0chr7:31428315-31428420-1,4241.65AUGGGAUCCUGUUGGUGGGUUACmiR5206MIRNAShortStack
mtr-b4.0r1-94145Medicago truncatula (Barrel Medic) 4.0chr7:31447510-31447696-4,0524.70AACCCUCAAAGGCUUCCACGGmiR5037MIRNAShortStack
mtr-b4.0r1-94147Medicago truncatula (Barrel Medic) 4.0chr7:31448658-31448797+4,3965.10CUGGAAGGUUUUGAAGGAAACMIRNAShortStack
mtr-b4.0r1-94152Medicago truncatula (Barrel Medic) 4.0chr7:31452327-31452467-4,0324.68GUGGGAUCCGUUGAUGGGUUACmiR5206MIRNAShortStack
mtr-b4.0r1-94155Medicago truncatula (Barrel Medic) 4.0chr7:31454401-31454505-5,1555.98AACCCUCAAAGGCUUCCACGGmiR5037MIRNAShortStack
mtr-b4.0r1-94160Medicago truncatula (Barrel Medic) 4.0chr7:31460144-31460245+23,30527.04GCUGGAAGGUUUUGUAGGAACmiR5204MIRNAShortStack
mtr-b4.0r1-94283Medicago truncatula (Barrel Medic) 4.0chr7:31748916-31749028+99,600115.57UUGACAGAAGAUAGAGAGCACmiR156MIRNAShortStack
mtr-b4.0r1-97506Medicago truncatula (Barrel Medic) 4.0chr7:40820949-40821099-9,95811.56UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAShortStack
mtr-b4.0r1-98655Medicago truncatula (Barrel Medic) 4.0chr7:43956422-43956607-22,33325.91CAUUUGGAGAGACAUAGACAAmiR5561MIRNAShortStack
mtr-b4.0r1-99501Medicago truncatula (Barrel Medic) 4.0chr7:46301193-46301476+251,862292.24UUAAUCUAGGAAAAUACGGUGGmiR1509MIRNAShortStack
mtr-b4.0r1-99539Medicago truncatula (Barrel Medic) 4.0chr7:46417714-46417802-85,61399.34UGGAGAAGCAGGGCACGUGCAmiR164MIRNAShortStack
mtr-b4.0r1-102966Medicago truncatula (Barrel Medic) 4.0chr8:7860833-7861088+7,7709.02UGGAGAAGCAGGGCACAUGCUmiR164MIRNAShortStack
mtr-b4.0r1-104144Medicago truncatula (Barrel Medic) 4.0chr8:10772467-10772736-29,30434.00UCUCGAUCAAUUCAAGUGCAUAMIRNAShortStack
mtr-b4.0r1-110617Medicago truncatula (Barrel Medic) 4.0chr8:35988336-35988417+6150.71UGCCAAAGAAGAUUUGCCCUGmiR399MIRNAShortStack
mtr-b4.0r1-110618Medicago truncatula (Barrel Medic) 4.0chr8:35997824-35997901+6020.70UGCCAAAGGAGAUUUGCCCUGmiR399MIRNAShortStack
mtr-b4.0r1-111377Medicago truncatula (Barrel Medic) 4.0chr8:38022279-38022504-627,667728.30UUAAUCAGGGAAAUCACAGUUMIRNAShortStack
mtr-b4.0r1-111380Medicago truncatula (Barrel Medic) 4.0chr8:38025256-38025345-12,38514.37UUAAUCAUGGAAAUCAUGGUUAMIRNAShortStack
mtr-b4.0r1-112802Medicago truncatula (Barrel Medic) 4.0chr8:41702753-41702935-140,874163.46UUGGACUGAAGGGAGCUCCCUmiR319MIRNAShortStack