het siRNAsData from Lunardon et al. (2020)miRNA

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Genome

Phaseolus vulgaris (Common Bean) genome build 1.0 (pvu-b1.0)

Version v1.0 of Phaseolus vulgaris cv. BAT93 from Phytozome

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
pvu-b1.0r1-1840Phaseolus vulgaris (Common Bean) 1.0Chr01:31806011-31806084-2251.24UCUCGGAAAUCUUGUUAGCCnearMIRNAShortStack
pvu-b1.0r1-4386Phaseolus vulgaris (Common Bean) 1.0Chr02:2524093-2524225+8194.51AUUGAGUAAUGUUAUGCUGUCAAAnearMIRNAShortStack
pvu-b1.0r1-6462Phaseolus vulgaris (Common Bean) 1.0Chr02:30390801-30390978-11,52563.48UUGGACUGAAGGGAGCUCCCmiR319nearMIRNAShortStack
pvu-b1.0r1-7077Phaseolus vulgaris (Common Bean) 1.0Chr02:35816787-35816888+760.42AAAAACACUUGUAGAAUAAUUGGCnearMIRNAShortStack
pvu-b1.0r1-7797Phaseolus vulgaris (Common Bean) 1.0Chr02:41742487-41742615+7634.20UUGGCAUUCUGUCCACCUCCmiR394nearMIRNAShortStack
pvu-b1.0r1-8532Phaseolus vulgaris (Common Bean) 1.0Chr02:47268312-47268338-5483.02AGAGAGACUCAAAUUUUGAAUAAGnearMIRNAShortStack
pvu-b1.0r1-10302Phaseolus vulgaris (Common Bean) 1.0Chr03:13284176-13284253+2161.19UGGACAAUGACACUCGUAAGACACnearMIRNAShortStack
pvu-b1.0r1-11614Phaseolus vulgaris (Common Bean) 1.0Chr03:37132294-37132367+33,696185.61UGGACUGAAGGGAGCUCCUUCmiR319nearMIRNAShortStack
pvu-b1.0r1-12744Phaseolus vulgaris (Common Bean) 1.0Chr03:45305238-45305262+2341.29CUGAAUUAUGUAAUCUGGAAGCCUnearMIRNAShortStack
pvu-b1.0r1-13358Phaseolus vulgaris (Common Bean) 1.0Chr03:49406146-49406168+1,93710.67UAUUGGCCUGGUUCACUCAGAmiR171nearMIRNAShortStack
pvu-b1.0r1-13359Phaseolus vulgaris (Common Bean) 1.0Chr03:49406245-49406267+1,7369.56UGAUUGAGCCGUGCCAAUAUCmiR171nearMIRNAShortStack
pvu-b1.0r1-14881Phaseolus vulgaris (Common Bean) 1.0Chr04:11667517-11667600+1,0755.92UAUACUCUGCUCACAGAACUGCnearMIRNAShortStack
pvu-b1.0r1-16225Phaseolus vulgaris (Common Bean) 1.0Chr04:42821618-42821647-48,929269.51UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
pvu-b1.0r1-18067Phaseolus vulgaris (Common Bean) 1.0Chr05:26427705-26427743-2341.29GAUAGAGAAGUCGGAUGGAGACGCnearMIRNAShortStack
pvu-b1.0r1-19017Phaseolus vulgaris (Common Bean) 1.0Chr05:37407927-37407949+7524.14AGAAUCUUGAUGAUGCUGCACmiR172nearMIRNAShortStack
pvu-b1.0r1-21973Phaseolus vulgaris (Common Bean) 1.0Chr06:29670207-29670263-5,03127.71UAGAAGAUUCCCAUGUUCUCAnearMIRNAShortStack
pvu-b1.0r1-24452Phaseolus vulgaris (Common Bean) 1.0Chr07:32746906-32747015-2791.54AAGAAGAUUUGUACUCAUUGUAGAnearMIRNAShortStack
pvu-b1.0r1-25800Phaseolus vulgaris (Common Bean) 1.0Chr07:45803282-45803304+2261.25CACGUGCUCCCCUUCUCCAACmiR164nearMIRNAShortStack
pvu-b1.0r1-26016Phaseolus vulgaris (Common Bean) 1.0Chr07:47356133-47356158-1790.99UGGAUUAGGUAGAUUUGUGAGAAUnearMIRNAShortStack
pvu-b1.0r1-26778Phaseolus vulgaris (Common Bean) 1.0Chr08:617176-617199-870.48GAAAAAUGAUAUAAGGACAACUUUnearMIRNAShortStack
pvu-b1.0r1-26999Phaseolus vulgaris (Common Bean) 1.0Chr08:1741249-1741269-6483.57UUGAUUCUCAUCACAACAUGUmiR4415nearMIRNAShortStack
pvu-b1.0r1-27469Phaseolus vulgaris (Common Bean) 1.0Chr08:5294590-5294615-620.34AUUUCGGAAUGUAAAAUAUGAGGCnearMIRNAShortStack
pvu-b1.0r1-27887Phaseolus vulgaris (Common Bean) 1.0Chr08:9090853-9090877-4642.56CAUGUGCCCCUCUUCCCCAUCmiR164nearMIRNAShortStack
pvu-b1.0r1-28025Phaseolus vulgaris (Common Bean) 1.0Chr08:10157398-10157671-1881.04ACCGCAUUUGUAUAUUAUUAUGAAnearMIRNAShortStack
pvu-b1.0r1-28404Phaseolus vulgaris (Common Bean) 1.0Chr08:14560225-14560288+630.35AAACGUUUGAUUUACGAAUUCGGCnearMIRNAShortStack
pvu-b1.0r1-29108Phaseolus vulgaris (Common Bean) 1.0Chr08:41564248-41564282+1450.80AAAAAAGACUAGUAGAAGAAGAACnearMIRNAShortStack
pvu-b1.0r1-33775Phaseolus vulgaris (Common Bean) 1.0Chr09:22103463-22103548+1,1286.21GGAAUGUUGGCUGGCUCGAGGmiR166nearMIRNAShortStack
pvu-b1.0r1-33776Phaseolus vulgaris (Common Bean) 1.0Chr09:22103669-22103716+7103.91GGAAUGUUGUCUGGCUCGAGGmiR166nearMIRNAShortStack
pvu-b1.0r1-33777Phaseolus vulgaris (Common Bean) 1.0Chr09:22103792-22103834+8,04244.30UCGGACCAGGCUUCAUUCCCCmiR166nearMIRNAShortStack
pvu-b1.0r1-34631Phaseolus vulgaris (Common Bean) 1.0Chr09:29972656-29972680-1680.93CAUGUGCCCCUCUUCCCCAUCmiR164nearMIRNAShortStack
pvu-b1.0r1-36258Phaseolus vulgaris (Common Bean) 1.0Chr10:6168504-6168739-1,89110.42AAUAGAAUUCUAGAUUAGAAGAUCnearMIRNAShortStack
pvu-b1.0r1-36521Phaseolus vulgaris (Common Bean) 1.0Chr10:10267630-10267654-7304.02CAUGUGCCCCUCUUCCCCAUCmiR164nearMIRNAShortStack
pvu-b1.0r1-36522Phaseolus vulgaris (Common Bean) 1.0Chr10:10267751-10267783-7,63742.07UGGAGAAGCAGGGCACGUGCAmiR164nearMIRNAShortStack
pvu-b1.0r1-37691Phaseolus vulgaris (Common Bean) 1.0Chr10:39204885-39205028-1720.95AGUAUUUCUUGAAACUGUAGAGGCnearMIRNAShortStack
pvu-b1.0r1-39646Phaseolus vulgaris (Common Bean) 1.0Chr11:7806650-7806760-5272.90AUGUAGAAGUCCUGUCAAGUUGGCnearMIRNAShortStack
pvu-b1.0r1-39688Phaseolus vulgaris (Common Bean) 1.0Chr11:8059579-8059599+3311.82UGCAUUUGCACCUGCACUUUAmiR530nearMIRNAShortStack