| Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
|---|
| can-MIR166c-m1 | Capsicum annuum (Pepper) 1.6 | chr01:493284-493405 | - | 1,025,873 | 1,439.91 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIR319c-m1 | Capsicum annuum (Pepper) 1.6 | chr01:2960379-2960485 | - | 1,324 | 1.86 | UUGCUGCCGACUCAUUCAUCCA | miR319 | MIRNA | Qin_et_al_2014 |
| can-MIR159a-m1 | Capsicum annuum (Pepper) 1.6 | chr01:3711426-3711632 | + | 143,138 | 200.91 | UUUGGAUUGAAGGGAGCUCUA | miR159 | nearMIRNA | Qin_et_al_2014 |
| can-MIR159b-m1 | Capsicum annuum (Pepper) 1.6 | chr01:3712787-3712967 | + | 77,909 | 109.35 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | Qin_et_al_2014 |
| can-MIRC1-m1 | Capsicum annuum (Pepper) 1.6 | chr01:17175614-17175704 | + | 1,202 | 1.69 | AGAUUUGAGAACCUGAGGGUU | | MIRNA | Qin_et_al_2014 |
| can-MIR171b-m1 | Capsicum annuum (Pepper) 1.6 | chr01:27166081-27166138 | - | 936 | 1.31 | UAUUGGCCUGGUUCACUCAGA | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR168b-m1 | Capsicum annuum (Pepper) 1.6 | chr01:46651896-46652185 | - | 50,908 | 71.45 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | Qin_et_al_2014 |
| can-MIRC29-m1 | Capsicum annuum (Pepper) 1.6 | chr01:69104826-69104930 | - | 1,332 | 1.87 | UGAAACAAAAUGGAGUCUCACAC | | nearMIRNA | Qin_et_al_2014 |
| can-MIR536-m1 | Capsicum annuum (Pepper) 1.6 | chr01:182254259-182254320 | . | 373 | 0.52 | CGCACACAGCGUGGCUCCAUC | miR536 | siRNA24 | Qin_et_al_2014 |
| can-MIRC12-m1 | Capsicum annuum (Pepper) 1.6 | chr01:202970177-202970310 | - | 238 | 0.33 | AGAAUUAGUUGUUACCUUAGGCUC | | siRNA24 | Qin_et_al_2014 |
| can-MIR403-m1 | Capsicum annuum (Pepper) 1.6 | chr01:208787456-208787556 | - | 135,456 | 190.13 | UUAGAUUCACGCACAAACUCG | miR403 | MIRNA | Qin_et_al_2014 |
| can-MIR168a-m1 | Capsicum annuum (Pepper) 1.6 | chr01:303173528-303173593 | + | 1,918 | 2.69 | CCUGCCUUGCAUCAACUGAAU | miR168 | nearMIRNA | Qin_et_al_2014 |
| can-MIRC5-m1 | Capsicum annuum (Pepper) 1.6 | chr01:303387482-303387668 | . | 1,382 | 1.94 | UCUGAACUAAAUUUGAGCGUA | | siRNA21 | Qin_et_al_2014 |
| can-MIR166b-m1 | Capsicum annuum (Pepper) 1.6 | chr01:306510706-306510824 | + | 18,658 | 26.19 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIR171a-m1 | Capsicum annuum (Pepper) 1.6 | chr02:4461830-4461918 | - | 628 | 0.88 | UAUUGGCCUGGUUCACUCAGA | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIRC15-m1 | Capsicum annuum (Pepper) 1.6 | chr02:12957969-12958042 | - | 10 | 0.01 | UAAGAAGAUAAUAGCAGAGCG | | nearMIRNA | Qin_et_al_2014 |
| can-MIRC28-m1 | Capsicum annuum (Pepper) 1.6 | chr02:44885654-44885808 | . | 2,413 | 3.39 | CAACCCAGAACCGUAUUACUG | | siRNA21 | Qin_et_al_2014 |
| can-MIR5303c-m1 | Capsicum annuum (Pepper) 1.6 | chr02:141052785-141052867 | . | 261 | 0.37 | UUUUUGAAGGAUCCGAACAAUA | | siRNA24 | Qin_et_al_2014 |
| can-MIR171f-m1 | Capsicum annuum (Pepper) 1.6 | chr02:146497056-146497145 | + | 2,412 | 3.39 | UGAUUGAGCCGUGCCAAUAUC | miR171 | siRNA21 | Qin_et_al_2014 |
| can-MIR171g-m1 | Capsicum annuum (Pepper) 1.6 | chr02:152119301-152119403 | - | 3,994 | 5.61 | UAUUGGCCUGGUUCACUCAGA | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR156c-m1 | Capsicum annuum (Pepper) 1.6 | chr02:157306026-157306115 | - | 43,493 | 61.05 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR3627-m1 | Capsicum annuum (Pepper) 1.6 | chr02:165612131-165612227 | + | 1,284 | 1.80 | UCGCAGGAGAGAUGGCACUUA | miR3627 | MIRNA | Qin_et_al_2014 |
| can-MIR169b-m1 | Capsicum annuum (Pepper) 1.6 | chr02:166508056-166508185 | + | 279 | 0.39 | CAGCCAAGGAUGACUUGCCGG | miR169 | MIRNA | Qin_et_al_2014 |
| can-MIRC21-m1 | Capsicum annuum (Pepper) 1.6 | chr03:10871848-10871916 | . | 94 | 0.13 | AGAAUCGGUUUCUUAGUUGUAGGU | | siRNA24 | Qin_et_al_2014 |
| can-MIR166e-m1 | Capsicum annuum (Pepper) 1.6 | chr03:20683060-20683181 | + | 125,316 | 175.89 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIR167c-m1 | Capsicum annuum (Pepper) 1.6 | chr03:21431652-21431726 | - | 116,551 | 163.59 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | Qin_et_al_2014 |
| can-MIR164c-m1 | Capsicum annuum (Pepper) 1.6 | chr03:29242771-29242858 | + | 135 | 0.19 | UGGAGAAGCAGGGCACAUGUU | miR164 | MIRNA | Qin_et_al_2014 |
| can-MIR167b-m1 | Capsicum annuum (Pepper) 1.6 | chr03:143545613-143545724 | + | 61,026 | 85.66 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | Qin_et_al_2014 |
| can-MIR167a-m1 | Capsicum annuum (Pepper) 1.6 | chr03:145850519-145850602 | + | 4,499 | 6.32 | GAUCAUGUGGCAGCAUCACC | miR167 | MIRNA | Qin_et_al_2014 |
| can-MIR399e-m1 | Capsicum annuum (Pepper) 1.6 | chr03:219314091-219314198 | + | 1,717 | 2.41 | GGGCGACUCUCUAUUGGCAUG | miR399 | MIRNA | Qin_et_al_2014 |
| can-MIRC16.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:224947736-224947992 | - | 55,544 | 77.96 | AAACGUUGAACUUGUCGGUAU | | MIRNA | Qin_et_al_2014 |
| can-MIRC16.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:224947736-224947992 | - | 55,544 | 77.96 | AAACGUUGAACUUGUCGGUAU | | MIRNA | Qin_et_al_2014 |
| can-MIRC16.3-m1 | Capsicum annuum (Pepper) 1.6 | chr03:224947736-224947992 | - | 55,544 | 77.96 | AAACGUUGAACUUGUCGGUAU | | MIRNA | Qin_et_al_2014 |
| can-MIR393a-m1 | Capsicum annuum (Pepper) 1.6 | chr03:230006838-230006915 | - | 9,960 | 13.98 | UCCAAAGGGAUCGCAUUGAUCC | miR393 | MIRNA | Qin_et_al_2014 |
| can-MIR166d-m1 | Capsicum annuum (Pepper) 1.6 | chr03:249936872-249937012 | + | 3,306,158 | 4,640.51 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIRC4-m1 | Capsicum annuum (Pepper) 1.6 | chr03:256979886-256979972 | + | 798 | 1.12 | UGCUUGUAGUAACUAUGGUAA | | MIRNA | Qin_et_al_2014 |
| can-MIR171c-m1 | Capsicum annuum (Pepper) 1.6 | chr03:258571242-258571333 | - | 6,644 | 9.33 | UGUUGGAACGGCUCAAUCAAA | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR162c-m1 | Capsicum annuum (Pepper) 1.6 | chr03:267603532-267603637 | + | 14,710 | 20.65 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR162b.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:267691841-267691929 | + | 1,624 | 2.28 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR162b.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:267691841-267691929 | + | 1,624 | 2.28 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR162e.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268472912-268473002 | - | 831 | 1.17 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR162e.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268472912-268473002 | - | 831 | 1.17 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR162f.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268521004-268521094 | - | 57,735 | 81.04 | UCGAUAAACCUCUGCAUCCGG | miR162 | siRNA21 | Qin_et_al_2014 |
| can-MIR162f.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268521004-268521094 | - | 57,735 | 81.04 | UCGAUAAACCUCUGCAUCCGG | miR162 | siRNA21 | Qin_et_al_2014 |
| can-MIR162d-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268574550-268574632 | - | 36,083 | 50.65 | UCGAUAAACCUCUGCAUCCAG | miR162 | MIRNA | Qin_et_al_2014 |
| can-MIR482c-m1 | Capsicum annuum (Pepper) 1.6 | chr03:268721958-268722045 | - | 2,510 | 3.52 | CUACCAACUCCACCCAUUCCUG | | MIRNA | Qin_et_al_2014 |
| can-MIR1446a.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:276000632-276000738 | - | 4,203 | 5.90 | UGAACUCUCUCCCUCAAUGGCU | miR1446 | MIRNA | Qin_et_al_2014 |
| can-MIR1446a.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:276000632-276000738 | - | 4,203 | 5.90 | UGAACUCUCUCCCUCAAUGGCU | miR1446 | MIRNA | Qin_et_al_2014 |
| can-MIR1446b.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:276009118-276009208 | - | 3,304 | 4.64 | UGAACUCUCUCCCUCAAUGGCU | miR1446 | MIRNA | Qin_et_al_2014 |
| can-MIR1446b.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:276009118-276009208 | - | 3,304 | 4.64 | UGAACUCUCUCCCUCAAUGGCU | miR1446 | MIRNA | Qin_et_al_2014 |
| can-MIR156b-m1 | Capsicum annuum (Pepper) 1.6 | chr03:277524880-277524999 | + | 21,496 | 30.17 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR159c.1-m1 | Capsicum annuum (Pepper) 1.6 | chr03:277675983-277676165 | + | 604,750 | 848.83 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | Qin_et_al_2014 |
| can-MIR159c.2-m1 | Capsicum annuum (Pepper) 1.6 | chr03:277675983-277676165 | + | 604,750 | 848.83 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | Qin_et_al_2014 |
| can-MIR4414a-m1 | Capsicum annuum (Pepper) 1.6 | chr03:277689395-277689490 | + | 7,199 | 10.10 | AGCUGCUGAAUCAUUGGUUCG | | siRNA21 | Qin_et_al_2014 |
| can-MIR166g-m1 | Capsicum annuum (Pepper) 1.6 | chr04:391807-391898 | - | 6,160,349 | 8,646.65 | UCUCGGACCAGGCUUCAUUCC | miR166 | nearMIRNA | Qin_et_al_2014 |
| can-MIR169k-m1 | Capsicum annuum (Pepper) 1.6 | chr04:23667984-23668107 | - | 526 | 0.74 | UAGCCAAGGAUGACUUGCCUG | miR169 | MIRNA | Qin_et_al_2014 |
| can-MIR172d-m1 | Capsicum annuum (Pepper) 1.6 | chr04:27359071-27359190 | - | 6,856 | 9.62 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIR1507-m1 | Capsicum annuum (Pepper) 1.6 | chr04:183013615-183013733 | - | 24,253 | 34.04 | UCUUACCGAUACCUCCCAUUCC | | MIRNA | Qin_et_al_2014 |
| can-MIR5301-m1 | Capsicum annuum (Pepper) 1.6 | chr04:183086663-183086771 | - | 2,019,977 | 2,835.23 | UCUUUCCUACUCCUCCCAUACC | miR482 | MIRNA | Qin_et_al_2014 |
| can-MIR482a-m1 | Capsicum annuum (Pepper) 1.6 | chr04:187884897-187884993 | - | 45,208 | 63.45 | UUUCCAAUUCCACCCAUUCCUA | miR482 | MIRNA | Qin_et_al_2014 |
| can-MIR172e-m1 | Capsicum annuum (Pepper) 1.6 | chr05:7683335-7683435 | + | 4,064 | 5.70 | AGAAUCUUGAUGAUGCUGCAG | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIRC27-m1 | Capsicum annuum (Pepper) 1.6 | chr05:45564956-45565045 | + | 7,973 | 11.19 | UUUCCAAAAUCUUAUGACAAG | | MIRNA | Qin_et_al_2014 |
| can-MIR5300-m1 | Capsicum annuum (Pepper) 1.6 | chr05:59799046-59799268 | - | 26,222 | 36.81 | UUCCCAGUCCAGGCAUUCCAAC | miR5300 | MIRNA | Qin_et_al_2014 |
| can-MIRC7.1-m1 | Capsicum annuum (Pepper) 1.6 | chr05:195053446-195053616 | + | 17,919 | 25.15 | UUAUGAGAUAAGUUCAACACG | | MIRNA | Qin_et_al_2014 |
| can-MIRC7.2-m1 | Capsicum annuum (Pepper) 1.6 | chr05:195053446-195053616 | + | 17,919 | 25.15 | UUAUGAGAUAAGUUCAACACG | | MIRNA | Qin_et_al_2014 |
| can-MIR172f-m1 | Capsicum annuum (Pepper) 1.6 | chr05:227093191-227093290 | - | 13,402 | 18.81 | GGAAUCUUGAUGAUGCUGCAG | miR172 | OtherRNA | Qin_et_al_2014 |
| can-MIR5303a-m1 | Capsicum annuum (Pepper) 1.6 | chr05:233870064-233870185 | . | 122 | 0.17 | UUUUUGGAGAGUGCGAGCAAC | miR5303 | siRNA21 | Qin_et_al_2014 |
| can-MIR172g-m1 | Capsicum annuum (Pepper) 1.6 | chr05:237652831-237652935 | - | 9,317 | 13.08 | AGAAUCUUGAUGCUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIRC25-m1 | Capsicum annuum (Pepper) 1.6 | chr05:237952407-237952570 | . | 542 | 0.76 | UCCAAUGAACUUGAGAGUCCU | | siRNA21 | Qin_et_al_2014 |
| can-MIR160a-m1 | Capsicum annuum (Pepper) 1.6 | chr05:238245134-238245222 | - | 21,574 | 30.28 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | Qin_et_al_2014 |
| can-MIR4414b-m1 | Capsicum annuum (Pepper) 1.6 | chr06:10480546-10480636 | + | 5,078 | 7.13 | AUCUGCCGACUCAUUCAUUCA | miR319 | MIRNA | Qin_et_al_2014 |
| can-MIR5303b-m1 | Capsicum annuum (Pepper) 1.6 | chr06:22119477-22119595 | . | 46 | 0.07 | AAAGGAUUUGACGUGAGUGUAACA | | siRNA24 | Qin_et_al_2014 |
| can-MIR172i-m1 | Capsicum annuum (Pepper) 1.6 | chr06:30060047-30060101 | - | 663 | 0.93 | GGAAUCUUGAUGAUGCUGCAU | miR172 | nearMIRNA | Qin_et_al_2014 |
| can-MIR166f-m1 | Capsicum annuum (Pepper) 1.6 | chr06:42707333-42707433 | + | 130,785 | 183.57 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIR156e-m1 | Capsicum annuum (Pepper) 1.6 | chr06:101485145-101485233 | - | 4,166 | 5.85 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR399d-m1 | Capsicum annuum (Pepper) 1.6 | chr06:132455317-132455412 | - | 360 | 0.51 | GGGUUGCUCUCUAUUGGCAUG | | MIRNA | Qin_et_al_2014 |
| can-MIR4376-m1 | Capsicum annuum (Pepper) 1.6 | chr06:163805306-163805420 | - | 85,557 | 120.09 | ACGCAGGAGAGAUGAUGCUGGA | miR391 | MIRNA | Qin_et_al_2014 |
| can-MIR482b-m1 | Capsicum annuum (Pepper) 1.6 | chr06:177068550-177068754 | - | 334,092 | 468.93 | UCUUGCCUACACCGCCCAUGCC | miR482 | MIRNA | Qin_et_al_2014 |
| can-MIR164d-m1 | Capsicum annuum (Pepper) 1.6 | chr06:210648683-210648769 | - | 968 | 1.36 | CAUGUGCUCUCGCUCUCCAGC | miR164 | siRNA21 | Qin_et_al_2014 |
| can-MIR171d-m1 | Capsicum annuum (Pepper) 1.6 | chr06:222384560-222384653 | + | 262 | 0.37 | UGAUUGAGCCGUGCCAAUAUC | miR171 | nearMIRNA | Qin_et_al_2014 |
| can-MIR156a-m1 | Capsicum annuum (Pepper) 1.6 | chr06:222814160-222814259 | - | 388,120 | 544.76 | UUGACAGAAGAUAGAGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR162a-m1 | Capsicum annuum (Pepper) 1.6 | chr06:223464645-223464711 | + | 4,167 | 5.85 | UCGAUAAACCUCUGCAUCCAG | miR162 | siRNA21 | Qin_et_al_2014 |
| can-MIRC10-m1 | Capsicum annuum (Pepper) 1.6 | chr06:223487856-223487990 | . | 546 | 0.77 | CAAGGACAUAGCCAUUACCUC | | siRNA21 | Qin_et_al_2014 |
| can-MIR171e-m1 | Capsicum annuum (Pepper) 1.6 | chr06:229404450-229404537 | + | 6,972 | 9.79 | UGAUUGAGCCGUGCCAAUAUC | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR169l-m1 | Capsicum annuum (Pepper) 1.6 | chr06:230163885-230164010 | - | 5,438 | 7.63 | UGAUAGCCAAGGAUGACUGGU | | MIRNA | Qin_et_al_2014 |
| can-MIR167d-m1 | Capsicum annuum (Pepper) 1.6 | chr06:240767473-240767555 | - | 7,525 | 10.56 | UGAAGCUGCCAGCAUGAUCUA | miR167 | MIRNA | Qin_et_al_2014 |
| can-MIR156f-m1 | Capsicum annuum (Pepper) 1.6 | chr07:9790735-9790826 | - | 18,603 | 26.11 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR169h-m1 | Capsicum annuum (Pepper) 1.6 | chr07:18572947-18573036 | + | 2,606 | 3.66 | GGCAGUCUCCUUGGCUACC | miR169 | OtherRNA | Qin_et_al_2014 |
| can-MIR169i-m1 | Capsicum annuum (Pepper) 1.6 | chr07:18573372-18573465 | + | 174 | 0.24 | UAGCCAAGGAUGACUUGCCUG | miR169 | MIRNA | Qin_et_al_2014 |
| can-MIR169f-m1 | Capsicum annuum (Pepper) 1.6 | chr07:19265141-19265241 | + | 355 | 0.50 | UAGCCAAGGAUGACUUGCCU | miR169 | OtherRNA | Qin_et_al_2014 |
| can-MIR169j-m1 | Capsicum annuum (Pepper) 1.6 | chr07:19426425-19426521 | - | 579 | 0.81 | GCAAGUCAUCCUGGCUAACU | | OtherRNA | Qin_et_al_2014 |
| can-MIR169g-m1 | Capsicum annuum (Pepper) 1.6 | chr07:19522126-19522225 | . | 8 | 0.01 | GCAGUCUCCUUGGCUACC | miR169 | OtherRNA | Qin_et_al_2014 |
| can-MIR399g-m1 | Capsicum annuum (Pepper) 1.6 | chr07:23157671-23157785 | - | 1 | 0.00 | UGCCAAAGAAGAUUUGCC | miR399 | OtherRNA | Qin_et_al_2014 |
| can-MIR396b-m1 | Capsicum annuum (Pepper) 1.6 | chr07:28993058-28993180 | + | 870,355 | 1,221.63 | CAGCUUUCUUGAACUG | miR396 | OtherRNA | Qin_et_al_2014 |
| can-MIR396a-m1 | Capsicum annuum (Pepper) 1.6 | chr07:28993068-28993168 | + | 870,353 | 1,221.63 | CAGCUUUCUUGAACUG | miR396 | OtherRNA | Qin_et_al_2014 |
| can-MIR396c-m1 | Capsicum annuum (Pepper) 1.6 | chr07:29086999-29087105 | - | 92,288 | 129.54 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | Qin_et_al_2014 |
| can-MIR171i-m1 | Capsicum annuum (Pepper) 1.6 | chr07:30723128-30723236 | - | 581 | 0.82 | UUGAGCCGCGCCAAUAUCAUU | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR2873c-m1 | Capsicum annuum (Pepper) 1.6 | chr07:60141005-60141098 | + | 1 | 0.00 | AUGUAUGAUUUGGUUGGGAU | | siRNA20 | Qin_et_al_2014 |
| can-MIRC17a-m1 | Capsicum annuum (Pepper) 1.6 | chr07:226202917-226203006 | - | 51 | 0.07 | UCUGGACAACAUGCGAGGAUA | | siRNA21 | Qin_et_al_2014 |
| can-MIRC17a-m2 | Capsicum annuum (Pepper) 1.6 | chr07:226335382-226335471 | . | 8 | 0.01 | AUCCUCGCGUGAUGUCCAGGAGGA | | OtherRNA | Qin_et_al_2014 |
| can-MIRC17a-m3 | Capsicum annuum (Pepper) 1.6 | chr07:226576869-226576958 | - | 44 | 0.06 | UCUGGACAACAUGCGAGGAUA | | siRNA24 | Qin_et_al_2014 |
| can-MIRC17a-m4 | Capsicum annuum (Pepper) 1.6 | chr07:226790072-226790161 | . | 18 | 0.03 | UUGUUAGCCUACUAUCUAGUCCUC | | siRNA24 | Qin_et_al_2014 |
| can-MIRC17b-m1 | Capsicum annuum (Pepper) 1.6 | chr07:226945475-226945565 | . | 7 | 0.01 | UCCAGGAGGACUAGACAAUAGGCU | | OtherRNA | Qin_et_al_2014 |
| can-MIRC17a-m5 | Capsicum annuum (Pepper) 1.6 | chr07:227114072-227114161 | - | 7 | 0.01 | AUGUCAUAUUAUCCUCGCGUGAUU | | OtherRNA | Qin_et_al_2014 |
| can-MIRC17b-m2 | Capsicum annuum (Pepper) 1.6 | chr07:227419048-227419138 | + | 3 | 0.00 | UGACAUUUCGUUCCUGCUU | | OtherRNA | Qin_et_al_2014 |
| can-MIR397a-m1 | Capsicum annuum (Pepper) 1.6 | chr07:243167906-243167999 | - | 171,799 | 241.14 | AUUGAGUGCAGCGUUGAUGAC | miR397 | MIRNA | Qin_et_al_2014 |
| can-MIR397b-m1 | Capsicum annuum (Pepper) 1.6 | chr07:243167906-243167999 | - | 171,799 | 241.14 | AUUGAGUGCAGCGUUGAUGAC | miR397 | MIRNA | Qin_et_al_2014 |
| can-MIR156g-m1 | Capsicum annuum (Pepper) 1.6 | chr07:248257650-248257732 | - | 125 | 0.18 | UUGACAGAAGAGAGAGAGUAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR169d-m1 | Capsicum annuum (Pepper) 1.6 | chr08:114366194-114366297 | + | 109 | 0.15 | UUAGCCAAGGAUGACUUGCCU | miR169 | nearMIRNA | Qin_et_al_2014 |
| can-MIR169e-m1 | Capsicum annuum (Pepper) 1.6 | chr08:114429930-114430038 | + | 69 | 0.10 | GGCAGUCGUCUUUAGCUAUA | | nearMIRNA | Qin_et_al_2014 |
| can-MIR477b-m1 | Capsicum annuum (Pepper) 1.6 | chr08:135650518-135650604 | + | 10,736 | 15.07 | CCUCUCCCUCAAGGGCUUCUU | miR477 | MIRNA | Qin_et_al_2014 |
| can-MIR477a-m1 | Capsicum annuum (Pepper) 1.6 | chr08:135650667-135650762 | + | 4,103 | 5.76 | ACUCUCCCUCAAAGGCUUCUG | miR477 | MIRNA | Qin_et_al_2014 |
| can-MIR166a-m1 | Capsicum annuum (Pepper) 1.6 | chr08:136685304-136685450 | + | 265,586 | 372.78 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIRC6-m1 | Capsicum annuum (Pepper) 1.6 | chr08:138981297-138981467 | + | 170 | 0.24 | AUUGGGUAUCGUUUGUAGACAACC | | MIRNA | Qin_et_al_2014 |
| can-MIRC18-m1 | Capsicum annuum (Pepper) 1.6 | chr09:3159393-3159521 | + | 14,093 | 19.78 | AGGAAGGAACUCCACGUCAUUGCU | | MIRNA | Qin_et_al_2014 |
| can-MIR482d-m1 | Capsicum annuum (Pepper) 1.6 | chr09:4978111-4978217 | - | 16,958 | 23.80 | CUUUGUCAUUGUCAUCGUUGCUUG | | MIRNA | Qin_et_al_2014 |
| can-MIR160b-m1 | Capsicum annuum (Pepper) 1.6 | chr09:10548884-10548973 | - | 281 | 0.39 | UGCCUGGCUCCUUGUAUGCCA | miR160 | MIRNA | Qin_et_al_2014 |
| can-MIR390a-m1 | Capsicum annuum (Pepper) 1.6 | chr09:162147120-162147227 | - | 6,152 | 8.64 | AAGCUCAGGAGGGAUAGCGCC | miR390 | MIRNA | Qin_et_al_2014 |
| can-MIRC9-m1 | Capsicum annuum (Pepper) 1.6 | chr09:179150555-179150659 | . | 387 | 0.54 | UGGAUUAAAAUUCAGAUGCUG | | siRNA21 | Qin_et_al_2014 |
| can-MIR171j-m1 | Capsicum annuum (Pepper) 1.6 | chr09:244266124-244266213 | + | 8,522 | 11.96 | UUGAGCCGCGCCAAUAUCACG | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR156h-m1 | Capsicum annuum (Pepper) 1.6 | chr09:269862995-269863085 | + | 49,131 | 68.96 | UUGACAGAAGAGAGUGAGCAU | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR156i-m1 | Capsicum annuum (Pepper) 1.6 | chr09:269862995-269863085 | + | 49,131 | 68.96 | UUGACAGAAGAGAGUGAGCAU | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR396d-m1 | Capsicum annuum (Pepper) 1.6 | chr09:270522187-270522405 | - | 25,239 | 35.43 | UUCCACAGCUUUCUUGAACUA | miR396 | MIRNA | Qin_et_al_2014 |
| can-MIR171h-m1 | Capsicum annuum (Pepper) 1.6 | chr09:270541456-270541572 | - | 1,450 | 2.04 | UUGAGCCGCGCCAAUAUCACU | miR171 | MIRNA | Qin_et_al_2014 |
| can-MIR399c-m1 | Capsicum annuum (Pepper) 1.6 | chr10:18745012-18745101 | . | 3 | 0.00 | UGCCAAAGGAGAGUUGCCCUG | miR399 | siRNA21 | Qin_et_al_2014 |
| can-MIRC23-m1 | Capsicum annuum (Pepper) 1.6 | chr10:56145144-56145256 | + | 347 | 0.49 | UGACGUUAAGAUAGACCGUGCG | | MIRNA | Qin_et_al_2014 |
| can-MIRC22-m1 | Capsicum annuum (Pepper) 1.6 | chr10:56150945-56151031 | + | 407 | 0.57 | CUUUUGCCUAUAAGGCAGACU | | siRNA21 | Qin_et_al_2014 |
| can-MIR390b-m1 | Capsicum annuum (Pepper) 1.6 | chr10:161246647-161246746 | - | 10,961 | 15.39 | AAGCUCAGGAGGGAUAGCACC | miR390 | MIRNA | Qin_et_al_2014 |
| can-MIR169a-m1 | Capsicum annuum (Pepper) 1.6 | chr10:195781097-195781218 | + | 785 | 1.10 | ACAUCCAAGGAUGACUUGCUG | | MIRNA | Qin_et_al_2014 |
| can-MIR169c-m1 | Capsicum annuum (Pepper) 1.6 | chr10:195781118-195781198 | + | 726 | 1.02 | ACAUCCAAGGAUGACUUGCUG | | MIRNA | Qin_et_al_2014 |
| can-MIR164b-m1 | Capsicum annuum (Pepper) 1.6 | chr10:195825579-195825718 | - | 6,192 | 8.69 | UGGAGAAGCAGGGCGCGUGCA | miR164 | MIRNA | Qin_et_al_2014 |
| can-MIRC3-m1 | Capsicum annuum (Pepper) 1.6 | chr10:209227417-209227618 | - | 6,969 | 9.78 | AUUUCCUGGUAGCUAAGUUGU | | siRNA21 | Qin_et_al_2014 |
| can-MIR172h-m1 | Capsicum annuum (Pepper) 1.6 | chr10:214920964-214921049 | - | 5,772 | 8.10 | UGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIR166i-m1 | Capsicum annuum (Pepper) 1.6 | chr10:226967948-226968154 | - | 1,388,617 | 1,949.06 | UCUCGGACCAGGCUUCAUUCC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIRC11-m1 | Capsicum annuum (Pepper) 1.6 | chr10:231582952-231583098 | + | 1,806 | 2.54 | UCAGAAUAUGAUGAUGUGAGCUU | | MIRNA | Qin_et_al_2014 |
| can-MIRC14-m1 | Capsicum annuum (Pepper) 1.6 | chr11:186082-186367 | - | 3,640 | 5.11 | UGCUGCAAGCUGUGAACCGGC | | siRNA21 | Qin_et_al_2014 |
| can-MIRC20-m1 | Capsicum annuum (Pepper) 1.6 | chr11:17240001-17240176 | . | 35 | 0.05 | AGAAUGCCAUGCUGCUCGUCA | | siRNA21 | Qin_et_al_2014 |
| can-MIR398b-m1 | Capsicum annuum (Pepper) 1.6 | chr11:18419927-18420025 | + | 705 | 0.99 | CUUGUGUUCUCAGGUCACCCC | miR398 | siRNA21 | Qin_et_al_2014 |
| can-MIR398a-m1 | Capsicum annuum (Pepper) 1.6 | chr11:18451011-18451110 | + | 2,936 | 4.12 | CUUGUGUUCUCAGGUCACCCC | miR398 | siRNA21 | Qin_et_al_2014 |
| can-MIR398d-m1 | Capsicum annuum (Pepper) 1.6 | chr11:18452314-18452409 | . | 759 | 1.07 | AGACGUGACUUGAGAACACAAGUA | | siRNA24 | Qin_et_al_2014 |
| can-MIRC19-m1 | Capsicum annuum (Pepper) 1.6 | chr11:18549513-18549631 | . | 197 | 0.28 | GAAUUAGUUAUUUCAGGAUUGUA | | OtherRNA | Qin_et_al_2014 |
| can-MIR395h-m1 | Capsicum annuum (Pepper) 1.6 | chr11:31422709-31422789 | + | 741 | 1.04 | CGGAAGUGUUUGGGGGAACUC | miR395 | OtherRNA | Qin_et_al_2014 |
| can-MIR395i-m1 | Capsicum annuum (Pepper) 1.6 | chr11:31607757-31607837 | + | 217 | 0.31 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395g-m1 | Capsicum annuum (Pepper) 1.6 | chr11:31650558-31650634 | + | 48 | 0.07 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395f-m1 | Capsicum annuum (Pepper) 1.6 | chr11:31841368-31841444 | + | 159 | 0.22 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395e-m1 | Capsicum annuum (Pepper) 1.6 | chr11:32093644-32093714 | - | 64 | 0.09 | CUGAAGUGUUUGGGGGAACUC | miR395 | nearMIRNA | Qin_et_al_2014 |
| can-MIR395d-m1 | Capsicum annuum (Pepper) 1.6 | chr11:32094686-32094767 | | 0 | 0.00 | | | NotExpressed | Qin_et_al_2014 |
| can-MIR395b-m1 | Capsicum annuum (Pepper) 1.6 | chr11:32179165-32179325 | - | 167 | 0.23 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395k-m1 | Capsicum annuum (Pepper) 1.6 | chr11:32179165-32179325 | - | 167 | 0.23 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395c-m1 | Capsicum annuum (Pepper) 1.6 | chr11:32179296-32179368 | - | 158 | 0.22 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR398e-m1 | Capsicum annuum (Pepper) 1.6 | chr11:182607693-182607793 | - | 8,964 | 12.58 | UAUGUUCUCAGGUCACCCCUA | | MIRNA | Qin_et_al_2014 |
| can-MIRC24-m1 | Capsicum annuum (Pepper) 1.6 | chr11:265671360-265671476 | + | 1,460 | 2.05 | AAAUAAUCGAGGUGGGUCAUGGGA | | OtherRNA | Qin_et_al_2014 |
| can-MIR172c-m1 | Capsicum annuum (Pepper) 1.6 | chr11:266059883-266060032 | - | 3,259 | 4.57 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIR2873b-m1 | Capsicum annuum (Pepper) 1.6 | chr12:571913-572228 | + | 3,221 | 4.52 | AUUGUCCGUUCUUUGUAGCUGAGU | | siRNA24 | Qin_et_al_2014 |
| can-MIR2873a-m1 | Capsicum annuum (Pepper) 1.6 | chr12:1953635-1953959 | . | 520 | 0.73 | ACGGACAAUUUUUUUCAAGAU | | siRNA24 | Qin_et_al_2014 |
| can-MIRC2a-m1 | Capsicum annuum (Pepper) 1.6 | chr12:3787622-3787709 | - | 28,952 | 40.64 | UUGCAAACACACCUGAAUCGU | | MIRNA | Qin_et_al_2014 |
| can-MIR6149-m1 | Capsicum annuum (Pepper) 1.6 | chr12:3788338-3788523 | - | 157,750 | 221.42 | UUCGAUACGCACCUGAAUCGCCU | | nearMIRNA | Qin_et_al_2014 |
| can-MIRC2b-m1 | Capsicum annuum (Pepper) 1.6 | chr12:3853939-3854025 | - | 18,781 | 26.36 | UUGCAAACACACCUGAAUCGU | | MIRNA | Qin_et_al_2014 |
| can-MIR172b-m1 | Capsicum annuum (Pepper) 1.6 | chr12:12357190-12357315 | + | 1,065 | 1.50 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIR172a-m1 | Capsicum annuum (Pepper) 1.6 | chr12:12376169-12376260 | + | 12,270 | 17.22 | AGAAUCUUGAUGAUGCUGCAU | miR172 | MIRNA | Qin_et_al_2014 |
| can-MIRC26-m1 | Capsicum annuum (Pepper) 1.6 | chr12:30636803-30636965 | . | 25 | 0.04 | UGAUGGAGAAACAACAGUAGC | | siRNA21 | Qin_et_al_2014 |
| can-MIR319a-m1 | Capsicum annuum (Pepper) 1.6 | chr12:194248738-194248914 | + | 923 | 1.30 | UUGGACUGAAGGGAGCUCCCU | miR319 | nearMIRNA | Qin_et_al_2014 |
| can-MIR394a-m1 | Capsicum annuum (Pepper) 1.6 | chr12:238131710-238131791 | + | 6,178 | 8.67 | UUGGCAUUCUGUCUACCUCC | miR394 | nearMIRNA | Qin_et_al_2014 |
| can-MIR156d-m1 | Capsicum annuum (Pepper) 1.6 | chr12:238466081-238466173 | + | 11,257 | 15.80 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | Qin_et_al_2014 |
| can-MIR398c-m1 | Capsicum annuum (Pepper) 1.6 | chr12:250482740-250482846 | - | 390,048 | 547.47 | UGUGUUCUCAGGUCGCCCCUG | miR398 | MIRNA | Qin_et_al_2014 |
| can-MIR408-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1248:480126-480210 | + | 140,494 | 197.20 | ACAGGGACGAGGCAGCGCAUG | miR408 | MIRNA | Qin_et_al_2014 |
| can-MIRC8-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1352:496414-496502 | - | 3,643 | 5.11 | UAUAGGAACAUUCAUUGAGAA | | siRNA21 | Qin_et_al_2014 |
| can-MIR164a-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1459:352039-352128 | + | 166,076 | 233.10 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | Qin_et_al_2014 |
| can-MIR394b-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1577:37537-37616 | - | 94 | 0.13 | UUGGCAUUCUGUCCACCUCC | miR394 | nearMIRNA | Qin_et_al_2014 |
| can-MIR166h-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1577:321581-321737 | + | 347,783 | 488.15 | UCGGACCAGGCUUCAUUCCUC | miR166 | MIRNA | Qin_et_al_2014 |
| can-MIR319b.1-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1693:150488-150675 | + | 153,456 | 215.39 | CUUGGACUGAAGGGAGCUCCC | miR319 | siRNA21 | Qin_et_al_2014 |
| can-MIR319b.2-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1693:150488-150675 | + | 153,456 | 215.39 | CUUGGACUGAAGGGAGCUCCC | miR319 | siRNA21 | Qin_et_al_2014 |
| can-MIR395a-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1783:28494-28574 | - | 49 | 0.07 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIR395j-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold1783:28494-28574 | - | 49 | 0.07 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | Qin_et_al_2014 |
| can-MIRC13.1-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold285:2639603-2639865 | - | 15,362 | 21.56 | UGUAGUUGUAGCCAUUCUAUU | | MIRNA | Qin_et_al_2014 |
| can-MIRC13.2-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold285:2639603-2639865 | - | 15,362 | 21.56 | UGUAGUUGUAGCCAUUCUAUU | | MIRNA | Qin_et_al_2014 |
| can-MIR399a-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:856400-856516 | . | 741 | 1.04 | UGCCAAAGGAGAAUUGCCCUG | miR399 | siRNA21 | Qin_et_al_2014 |
| can-MIR399b-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:860834-860928 | - | 381 | 0.54 | UGCCAAAGGAGAAUUGCCCUG | miR399 | siRNA21 | Qin_et_al_2014 |
| can-MIR399h-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:871323-871419 | - | 31 | 0.04 | GGGCUGAUCUUCUAUGGCAA | | nearMIRNA | Qin_et_al_2014 |
| can-MIR399a-m2 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:897292-897408 | . | 73 | 0.10 | UGCCAAAGGAGAAUUGCCCUG | miR399 | siRNA21 | Qin_et_al_2014 |
| can-MIR399f-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:931639-931735 | - | 19 | 0.03 | UGCCAAAGAAGAUUUGCCCCG | miR399 | OtherRNA | Qin_et_al_2014 |
| can-MIR399i-m1 | Capsicum annuum (Pepper) 1.6 | PGAv.1.6.scaffold866:969981-970100 | | 0 | 0.00 | | | NotExpressed | Qin_et_al_2014 |
Data from Lunardon et al. (2020)