Name | Genome | Coordinates | Strand | Reads | RPM | Major RNA | Family | Locus Type | Annotation Source |
atr-MIR171a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00001:2643225-2643370 | - | 2,271 | 48.34 | UGAUUGAGCCGCGCCAAUAUC | miR171 | MIRNA | AmborellaPaper_TS33 |
Cluster_627 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00001:6800559-6800782 | + | 254 | 5.41 | AAAGUUUUACGUUUGCUGUCUACC | | MIRNA | AmborellaPaper_TS33 |
Cluster_787 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00001:7919975-7920195 | + | 144 | 3.07 | UUUUGCUCAAGAUGGCGCAGC | | MIRNA | AmborellaPaper_TS33 |
atr-MIR8551 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00002:4164864-4165160 | + | 652 | 13.88 | AUGUUCUAGGUUAGCUCUUGGAUG | miR8551 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8560 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00002:6347799-6348098 | - | 1,176 | 25.03 | UCUACUUUAAACACUCAGCCU | | MIRNA | AmborellaPaper_TS33 |
atr-MIR166a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00002:8188982-8189083 | + | 160,479 | 3,415.84 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | AmborellaPaper_TS33 |
atr-MIR167 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00002:9895576-9895741 | - | 2,659 | 56.60 | UGAAGCUGCCAGCAUGAUCUG | miR167 | MIRNA | AmborellaPaper_TS33 |
atr-MIR477 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00003:709668-709849 | + | 203 | 4.32 | AGAGGCCUUAGGGGAGAGUGG | miR477 | MIRNA | AmborellaPaper_TS33 |
Cluster_2731 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00003:741321-741418 | + | 54 | 1.15 | ACUCUCCCUCAAGGGCUUCUGA | miR477 | MIRNA | AmborellaPaper_TS33 |
atr-MIR166b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00004:1713840-1714006 | + | 208,118 | 4,429.85 | UCUCGGACCAGGCUUCAUUCC | miR166 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8588 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00004:6062147-6062392 | + | 3,875 | 82.48 | CCGAGCUCCCAGGGUUAAUGG | miR8588 | MIRNA | AmborellaPaper_TS33 |
Cluster_5127 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00005:5171406-5171704 | + | 134 | 2.85 | AGAGAUUUUCGGAUGUUUAACAUU | | MIRNA | AmborellaPaper_TS33 |
atr-MIR164a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00007:3789229-3789353 | + | 3,662 | 77.95 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8614 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00007:6003383-6003599 | + | 372 | 7.92 | CAAUAGCUAAAGUGAUUGUGACC | miR8614 | MIRNA | AmborellaPaper_TS33 |
Cluster_9136 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00009:7849258-7849367 | - | 3,226 | 68.67 | AAUUGUCGGUCGCGCUACAGA | | MIRNA | AmborellaPaper_TS33 |
atr-MIR828 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00009:8165619-8165748 | + | 499 | 10.62 | UGAUACUCAUUUCAGCAAGCAA | miR828 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8555 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00011:6531643-6531925 | + | 3,594 | 76.50 | AGUUAACUAGGCAUCUAUAGGAUG | miR8555 | MIRNA | AmborellaPaper_TS33 |
atr-MIR168 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00011:8252667-8252896 | + | 17,537 | 373.28 | UCGCUUGGUGCAGGUCGGGAA | miR168 | MIRNA | AmborellaPaper_TS33 |
Cluster_11604 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00012:5434919-5435145 | + | 455 | 9.69 | UGUGGUACUAGUGGAAUUCAAGAC | | MIRNA | AmborellaPaper_TS33 |
atr-MIR172 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00012:6005508-6005804 | + | 98 | 2.09 | GGAAUCUUGAUGAUGCUGCA | miR172 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8556 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00013:1587032-1587326 | + | 388 | 8.26 | UAAAAGACAGGAAUUGUAACU | miR8556 | MIRNA | AmborellaPaper_TS33 |
Cluster_13342 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00014:5849175-5849421 | - | 637 | 13.56 | CUUCGGUCUGACACAUCAGUGUGU | | MIRNA | AmborellaPaper_TS33 |
atr-MIR397a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00016:5120337-5120492 | - | 3,544 | 75.44 | UCCUUGAGUGCAGCGUUGAUG | miR397 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8558b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00017:2879753-2880049 | + | 25,592 | 544.73 | UUUCCGAUCCCGCCCAUGCCGU | miR8558 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8558a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00017:2901029-2901189 | + | 62,284 | 1,325.73 | UUUCCGAAUCCGCCUAUACCUG | miR8558 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8559 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00017:4559611-4559811 | - | 667 | 14.20 | UGACACUGUAGUAGUCAACCCGUG | miR8559 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8565g | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00023:5789125-5789327 | - | 303 | 6.45 | CAUGUGUGUAGGAUUCCAAAUGAU | miR8565 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8566 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00024:74289-74584 | - | 297 | 6.32 | AUUAGAGCUGGGUGGAUGAAGUGG | miR8566 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8567 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00024:566615-566733 | + | 3,968 | 84.46 | ACAAGAUGCACUAAUUUUAGGACU | miR8567 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8568 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00024:4164779-4165014 | - | 1,911 | 40.68 | UGGCUUACUGUGAUCGUUGUCC | miR8568 | MIRNA | AmborellaPaper_TS33 |
Cluster_20966 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00027:437166-437393 | + | 3,353 | 71.37 | UUCUGAUAGCUCAAAAGGAGAA | | MIRNA | AmborellaPaper_TS33 |
atr-MIR8572 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00028:4881376-4881622 | + | 2,035 | 43.32 | UGACCCGGUCGUUGGAAUCCUCUC | miR8572 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8576 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00029:6178354-6178598 | - | 376 | 8.00 | AGCCAUCAUACUGGAUUUGUCGUA | miR8576 | MIRNA | AmborellaPaper_TS33 |
Cluster_22647 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00030:635590-635758 | - | 284 | 6.05 | UAGCUUCAACAGUGAUAGGGCAAG | | MIRNA | AmborellaPaper_TS33 |
atr-MIR8581 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00037:1871777-1872076 | - | 2,586 | 55.04 | UGAGAGAAUUUUGGUAUGACGACU | miR8581 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8582 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00039:1732374-1732503 | + | 488 | 10.39 | UAGGAGUCAUGACGUAGCUUG | miR8582 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8584 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00040:69933-70105 | + | 1,065 | 22.67 | UGAACCCUGGUCGUCGCGCUGUG | miR8584 | MIRNA | AmborellaPaper_TS33 |
Cluster_28932 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00041:1932039-1932207 | - | 7,562 | 160.96 | CGUGAUGUUGGUCCGGUUCAGU | | MIRNA | AmborellaPaper_TS33 |
Cluster_30575 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00045:1152262-1152501 | - | 4,607 | 98.06 | GCAGGGAUGAAGCUGAGCAUG | | MIRNA | AmborellaPaper_TS33 |
atr-MIR164b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00045:3520956-3521088 | - | 292 | 6.22 | UGGAGAAGCAGGGCACGUGCA | miR164 | MIRNA | AmborellaPaper_TS33 |
atr-MIR396c | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00046:1545633-1545816 | + | 6,363 | 135.44 | UUCCACAGCUUUCUUGAACUU | miR396 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8585 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00046:3620895-3621047 | - | 7,989 | 170.05 | UCACAGGAGAGAUGAUACUGGU | miR8585 | MIRNA | AmborellaPaper_TS33 |
Cluster_32192 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00048:2963777-2963893 | - | 130 | 2.77 | CUCUGUUGUUGUGAGAACAAA | miR8586 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8586 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00048:2976684-2976839 | - | 986 | 20.99 | UUUUCUCUUAACAACAGAGGA | miR8586 | MIRNA | AmborellaPaper_TS33 |
Cluster_33397 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00051:1522447-1522745 | + | 10,899 | 231.99 | AGGUAAACAACGUAAAUCUUGGUC | | MIRNA | AmborellaPaper_TS33 |
atr-MIR169b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00057:2389278-2389464 | - | 59 | 1.26 | AGCAAGUCGCCUUGGCUAACC | miR169 | MIRNA | AmborellaPaper_TS33 |
atr-MIR395 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00060:2574005-2574148 | + | 336 | 7.15 | CUGAAGUGUUUGGGGGAACUC | miR395 | MIRNA | AmborellaPaper_TS33 |
atr-MIR171b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00060:3430268-3430456 | + | 276 | 5.88 | UUGAGCCGUGCCAAUAUCACA | miR171 | MIRNA | AmborellaPaper_TS33 |
atr-MIR156d | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00065:3401522-3401718 | - | 2,294 | 48.83 | UGACAGAAGAGAGUGAGCAC | miR156 | MIRNA | AmborellaPaper_TS33 |
Cluster_42088 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00071:3736365-3736502 | - | 2,130 | 45.34 | UCGGACCAGGCUUCGUCCCUC | | MIRNA | AmborellaPaper_TS33 |
atr-MIR397b | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00072:1231145-1231260 | + | 4,180 | 88.97 | UCAUUGAGUGCAGCGUUGGUG | miR397 | MIRNA | AmborellaPaper_TS33 |
atr-MIR319a | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00077:2616711-2616892 | + | 1,089 | 23.18 | UUGGACUGAAGGGAGCUCCC | miR319 | MIRNA | AmborellaPaper_TS33 |
Cluster_46916 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00086:2820774-2821070 | - | 2,605 | 55.45 | ACUCGGACAACUACCCACAGAUGG | | MIRNA | AmborellaPaper_TS33 |
atr-MIR535 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00087:73178-73268 | + | 5,173 | 110.11 | UGACAACGAGAGAGAGCACGC | miR535 | MIRNA | AmborellaPaper_TS33 |
atr-MIR171c | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00088:670603-670719 | - | 549 | 11.69 | UGAUUGAGCCGCGCCAAUAUC | miR171 | MIRNA | AmborellaPaper_TS33 |
atr-MIR396d | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00090:1850377-1850605 | - | 3,663 | 77.97 | CUCCACGGCUUUCUUGAACUU | miR396 | MIRNA | AmborellaPaper_TS33 |
atr-MIR160 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00092:1776607-1776790 | - | 453 | 9.64 | UGCCUGGCUCCCUGUAUGCCA | miR160 | MIRNA | AmborellaPaper_TS33 |
atr-MIR398 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00102:1169815-1169999 | + | 22,581 | 480.64 | UGUGUUCCCAGGUCGCCCCUG | miR398 | MIRNA | AmborellaPaper_TS33 |
atr-MIR159 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00105:1236832-1237130 | - | 119,568 | 2,545.04 | UUUGGAUUGAAGGGAGCUCUA | miR159 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8602 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00108:1352014-1352110 | - | 11,332 | 241.21 | UCAGGAGAGAUGAUGCCGGCC | miR8602 | MIRNA | AmborellaPaper_TS33 |
atr-MIR166d | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00128:402266-402370 | - | 80,963 | 1,723.32 | UCGGACCAGGCUUCAUUCCCC | miR166 | MIRNA | AmborellaPaper_TS33 |
atr-MIR8606 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00140:438128-438355 | - | 189 | 4.02 | UCACCGAUCCGUUUUUUUAAACCU | miR8606 | MIRNA | AmborellaPaper_TS33 |
Cluster_58776 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00144:502434-502536 | - | 442 | 9.41 | CGAGACCUUGCAGAACACAACUCU | | MIRNA | AmborellaPaper_TS33 |
atr-MIR8607 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00161:484165-484344 | + | 2,092 | 44.53 | UUCGUAAUUCUAGAUCUCAGGCUC | | MIRNA | AmborellaPaper_TS33 |
atr-MIR2111 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00165:819319-819473 | + | 11,818 | 251.55 | UAAUCUGUAUCUUGAGGUUUG | miR2111 | MIRNA | AmborellaPaper_TS33 |
Cluster_62653 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00188:56139-56270 | + | 113 | 2.41 | UUCCGUAUGGUAGAGCGCUGCA | | MIRNA | AmborellaPaper_TS33 |
atr-MIR8611 | Amborella trichopoda (Amborella) 1 | AmTr_v1.0_scaffold00413:4554-4653 | - | 153 | 3.26 | UAAGGGCGCUCCGACAACGUG | miR8611 | MIRNA | AmborellaPaper_TS33 |