het siRNAsData from Lunardon et al. (2020)miRNA

Annotations viewer

Genome

Amborella trichopoda (Amborella) genome build 1 (atr-b1)

Version 1.0 genome from Amborella.org along with plastid and mitochondrial genomes

Locus type

Annotation source

Name contains:

Family contains:


NameGenomeCoordinatesStrandReadsRPMMajor RNAFamilyLocus TypeAnnotation Source
atr-MIR171aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00001:2643225-2643370-2,27148.34UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAAmborellaPaper_TS33
Cluster_627Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00001:6800559-6800782+2545.41AAAGUUUUACGUUUGCUGUCUACCMIRNAAmborellaPaper_TS33
Cluster_787Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00001:7919975-7920195+1443.07UUUUGCUCAAGAUGGCGCAGCMIRNAAmborellaPaper_TS33
atr-MIR8551Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:4164864-4165160+65213.88AUGUUCUAGGUUAGCUCUUGGAUGmiR8551MIRNAAmborellaPaper_TS33
atr-MIR8560Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:6347799-6348098-1,17625.03UCUACUUUAAACACUCAGCCUMIRNAAmborellaPaper_TS33
atr-MIR166aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:8188982-8189083+160,4793,415.84UCGGACCAGGCUUCAUUCCCCmiR166MIRNAAmborellaPaper_TS33
atr-MIR167Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00002:9895576-9895741-2,65956.60UGAAGCUGCCAGCAUGAUCUGmiR167MIRNAAmborellaPaper_TS33
atr-MIR477Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00003:709668-709849+2034.32AGAGGCCUUAGGGGAGAGUGGmiR477MIRNAAmborellaPaper_TS33
Cluster_2731Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00003:741321-741418+541.15ACUCUCCCUCAAGGGCUUCUGAmiR477MIRNAAmborellaPaper_TS33
atr-MIR166bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00004:1713840-1714006+208,1184,429.85UCUCGGACCAGGCUUCAUUCCmiR166MIRNAAmborellaPaper_TS33
atr-MIR8588Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00004:6062147-6062392+3,87582.48CCGAGCUCCCAGGGUUAAUGGmiR8588MIRNAAmborellaPaper_TS33
Cluster_5127Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00005:5171406-5171704+1342.85AGAGAUUUUCGGAUGUUUAACAUUMIRNAAmborellaPaper_TS33
atr-MIR164aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:3789229-3789353+3,66277.95UGGAGAAGCAGGGCACGUGCAmiR164MIRNAAmborellaPaper_TS33
atr-MIR8614Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00007:6003383-6003599+3727.92CAAUAGCUAAAGUGAUUGUGACCmiR8614MIRNAAmborellaPaper_TS33
Cluster_9136Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00009:7849258-7849367-3,22668.67AAUUGUCGGUCGCGCUACAGAMIRNAAmborellaPaper_TS33
atr-MIR828Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00009:8165619-8165748+49910.62UGAUACUCAUUUCAGCAAGCAAmiR828MIRNAAmborellaPaper_TS33
atr-MIR8555Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00011:6531643-6531925+3,59476.50AGUUAACUAGGCAUCUAUAGGAUGmiR8555MIRNAAmborellaPaper_TS33
atr-MIR168Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00011:8252667-8252896+17,537373.28UCGCUUGGUGCAGGUCGGGAAmiR168MIRNAAmborellaPaper_TS33
Cluster_11604Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00012:5434919-5435145+4559.69UGUGGUACUAGUGGAAUUCAAGACMIRNAAmborellaPaper_TS33
atr-MIR172Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00012:6005508-6005804+982.09GGAAUCUUGAUGAUGCUGCAmiR172MIRNAAmborellaPaper_TS33
atr-MIR8556Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00013:1587032-1587326+3888.26UAAAAGACAGGAAUUGUAACUmiR8556MIRNAAmborellaPaper_TS33
Cluster_13342Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00014:5849175-5849421-63713.56CUUCGGUCUGACACAUCAGUGUGUMIRNAAmborellaPaper_TS33
atr-MIR397aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00016:5120337-5120492-3,54475.44UCCUUGAGUGCAGCGUUGAUGmiR397MIRNAAmborellaPaper_TS33
atr-MIR8558bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:2879753-2880049+25,592544.73UUUCCGAUCCCGCCCAUGCCGUmiR8558MIRNAAmborellaPaper_TS33
atr-MIR8558aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:2901029-2901189+62,2841,325.73UUUCCGAAUCCGCCUAUACCUGmiR8558MIRNAAmborellaPaper_TS33
atr-MIR8559Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00017:4559611-4559811-66714.20UGACACUGUAGUAGUCAACCCGUGmiR8559MIRNAAmborellaPaper_TS33
atr-MIR8565gAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00023:5789125-5789327-3036.45CAUGUGUGUAGGAUUCCAAAUGAUmiR8565MIRNAAmborellaPaper_TS33
atr-MIR8566Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:74289-74584-2976.32AUUAGAGCUGGGUGGAUGAAGUGGmiR8566MIRNAAmborellaPaper_TS33
atr-MIR8567Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:566615-566733+3,96884.46ACAAGAUGCACUAAUUUUAGGACUmiR8567MIRNAAmborellaPaper_TS33
atr-MIR8568Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00024:4164779-4165014-1,91140.68UGGCUUACUGUGAUCGUUGUCCmiR8568MIRNAAmborellaPaper_TS33
Cluster_20966Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00027:437166-437393+3,35371.37UUCUGAUAGCUCAAAAGGAGAAMIRNAAmborellaPaper_TS33
atr-MIR8572Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00028:4881376-4881622+2,03543.32UGACCCGGUCGUUGGAAUCCUCUCmiR8572MIRNAAmborellaPaper_TS33
atr-MIR8576Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00029:6178354-6178598-3768.00AGCCAUCAUACUGGAUUUGUCGUAmiR8576MIRNAAmborellaPaper_TS33
Cluster_22647Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00030:635590-635758-2846.05UAGCUUCAACAGUGAUAGGGCAAGMIRNAAmborellaPaper_TS33
atr-MIR8581Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00037:1871777-1872076-2,58655.04UGAGAGAAUUUUGGUAUGACGACUmiR8581MIRNAAmborellaPaper_TS33
atr-MIR8582Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00039:1732374-1732503+48810.39UAGGAGUCAUGACGUAGCUUGmiR8582MIRNAAmborellaPaper_TS33
atr-MIR8584Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00040:69933-70105+1,06522.67UGAACCCUGGUCGUCGCGCUGUGmiR8584MIRNAAmborellaPaper_TS33
Cluster_28932Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00041:1932039-1932207-7,562160.96CGUGAUGUUGGUCCGGUUCAGUMIRNAAmborellaPaper_TS33
Cluster_30575Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00045:1152262-1152501-4,60798.06GCAGGGAUGAAGCUGAGCAUGMIRNAAmborellaPaper_TS33
atr-MIR164bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00045:3520956-3521088-2926.22UGGAGAAGCAGGGCACGUGCAmiR164MIRNAAmborellaPaper_TS33
atr-MIR396cAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00046:1545633-1545816+6,363135.44UUCCACAGCUUUCUUGAACUUmiR396MIRNAAmborellaPaper_TS33
atr-MIR8585Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00046:3620895-3621047-7,989170.05UCACAGGAGAGAUGAUACUGGUmiR8585MIRNAAmborellaPaper_TS33
Cluster_32192Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00048:2963777-2963893-1302.77CUCUGUUGUUGUGAGAACAAAmiR8586MIRNAAmborellaPaper_TS33
atr-MIR8586Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00048:2976684-2976839-98620.99UUUUCUCUUAACAACAGAGGAmiR8586MIRNAAmborellaPaper_TS33
Cluster_33397Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00051:1522447-1522745+10,899231.99AGGUAAACAACGUAAAUCUUGGUCMIRNAAmborellaPaper_TS33
atr-MIR169bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00057:2389278-2389464-591.26AGCAAGUCGCCUUGGCUAACCmiR169MIRNAAmborellaPaper_TS33
atr-MIR395Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00060:2574005-2574148+3367.15CUGAAGUGUUUGGGGGAACUCmiR395MIRNAAmborellaPaper_TS33
atr-MIR171bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00060:3430268-3430456+2765.88UUGAGCCGUGCCAAUAUCACAmiR171MIRNAAmborellaPaper_TS33
atr-MIR156dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00065:3401522-3401718-2,29448.83UGACAGAAGAGAGUGAGCACmiR156MIRNAAmborellaPaper_TS33
Cluster_42088Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00071:3736365-3736502-2,13045.34UCGGACCAGGCUUCGUCCCUCMIRNAAmborellaPaper_TS33
atr-MIR397bAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00072:1231145-1231260+4,18088.97UCAUUGAGUGCAGCGUUGGUGmiR397MIRNAAmborellaPaper_TS33
atr-MIR319aAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00077:2616711-2616892+1,08923.18UUGGACUGAAGGGAGCUCCCmiR319MIRNAAmborellaPaper_TS33
Cluster_46916Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00086:2820774-2821070-2,60555.45ACUCGGACAACUACCCACAGAUGGMIRNAAmborellaPaper_TS33
atr-MIR535Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00087:73178-73268+5,173110.11UGACAACGAGAGAGAGCACGCmiR535MIRNAAmborellaPaper_TS33
atr-MIR171cAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00088:670603-670719-54911.69UGAUUGAGCCGCGCCAAUAUCmiR171MIRNAAmborellaPaper_TS33
atr-MIR396dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00090:1850377-1850605-3,66377.97CUCCACGGCUUUCUUGAACUUmiR396MIRNAAmborellaPaper_TS33
atr-MIR160Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00092:1776607-1776790-4539.64UGCCUGGCUCCCUGUAUGCCAmiR160MIRNAAmborellaPaper_TS33
atr-MIR398Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00102:1169815-1169999+22,581480.64UGUGUUCCCAGGUCGCCCCUGmiR398MIRNAAmborellaPaper_TS33
atr-MIR159Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00105:1236832-1237130-119,5682,545.04UUUGGAUUGAAGGGAGCUCUAmiR159MIRNAAmborellaPaper_TS33
atr-MIR8602Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00108:1352014-1352110-11,332241.21UCAGGAGAGAUGAUGCCGGCCmiR8602MIRNAAmborellaPaper_TS33
atr-MIR166dAmborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00128:402266-402370-80,9631,723.32UCGGACCAGGCUUCAUUCCCCmiR166MIRNAAmborellaPaper_TS33
atr-MIR8606Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00140:438128-438355-1894.02UCACCGAUCCGUUUUUUUAAACCUmiR8606MIRNAAmborellaPaper_TS33
Cluster_58776Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00144:502434-502536-4429.41CGAGACCUUGCAGAACACAACUCUMIRNAAmborellaPaper_TS33
atr-MIR8607Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00161:484165-484344+2,09244.53UUCGUAAUUCUAGAUCUCAGGCUCMIRNAAmborellaPaper_TS33
atr-MIR2111Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00165:819319-819473+11,818251.55UAAUCUGUAUCUUGAGGUUUGmiR2111MIRNAAmborellaPaper_TS33
Cluster_62653Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00188:56139-56270+1132.41UUCCGUAUGGUAGAGCGCUGCAMIRNAAmborellaPaper_TS33
atr-MIR8611Amborella trichopoda (Amborella) 1AmTr_v1.0_scaffold00413:4554-4653-1533.26UAAGGGCGCUCCGACAACGUGmiR8611MIRNAAmborellaPaper_TS33